Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC6A1P30531 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.95■□□□□ 0.94
SLC6A1P30531 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC6A1P30531 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC6A1P30531 DUX4L28-201ENST00000623687 678 ntBASIC20.94■□□□□ 0.94
SLC6A1P30531 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.94■□□□□ 0.94
SLC6A1P30531 AC087741.3-201ENST00000624270 1347 ntBASIC20.94■□□□□ 0.94
SLC6A1P30531 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SLC6A1P30531 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC6A1P30531 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC6A1P30531 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC6A1P30531 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC6A1P30531 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC6A1P30531 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.93■□□□□ 0.94
SLC6A1P30531 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.93■□□□□ 0.94
SLC6A1P30531 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC6A1P30531 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.92■□□□□ 0.94
SLC6A1P30531 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SLC6A1P30531 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC6A1P30531 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC6A1P30531 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC6A1P30531 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.92■□□□□ 0.94
SLC6A1P30531 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC6A1P30531 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC6A1P30531 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SLC6A1P30531 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SLC6A1P30531 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.91■□□□□ 0.94
SLC6A1P30531 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC6A1P30531 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SLC6A1P30531 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.9■□□□□ 0.94
SLC6A1P30531 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.9■□□□□ 0.94
SLC6A1P30531 AC010501.1-201ENST00000606270 1962 ntBASIC20.9■□□□□ 0.94
SLC6A1P30531 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SLC6A1P30531 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SLC6A1P30531 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SLC6A1P30531 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
SLC6A1P30531 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC6A1P30531 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC6A1P30531 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SLC6A1P30531 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
SLC6A1P30531 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC6A1P30531 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.89■□□□□ 0.93
SLC6A1P30531 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SLC6A1P30531 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.88■□□□□ 0.93
SLC6A1P30531 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SLC6A1P30531 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SLC6A1P30531 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SLC6A1P30531 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.87■□□□□ 0.93
SLC6A1P30531 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.87■□□□□ 0.93
SLC6A1P30531 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SLC6A1P30531 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SLC6A1P30531 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC6A1P30531 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC6A1P30531 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SLC6A1P30531 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.86■□□□□ 0.93
SLC6A1P30531 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.86■□□□□ 0.93
SLC6A1P30531 AC142472.1-201ENST00000612013 1741 ntBASIC20.86■□□□□ 0.93
SLC6A1P30531 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.86■□□□□ 0.93
SLC6A1P30531 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.86■□□□□ 0.93
SLC6A1P30531 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC6A1P30531 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
SLC6A1P30531 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC6A1P30531 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SLC6A1P30531 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC6A1P30531 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SLC6A1P30531 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC6A1P30531 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC6A1P30531 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC6A1P30531 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SLC6A1P30531 CLDN5-201ENST00000403084 2357 ntBASIC20.84■□□□□ 0.93
SLC6A1P30531 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC6A1P30531 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SLC6A1P30531 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.84■□□□□ 0.93
SLC6A1P30531 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SLC6A1P30531 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
SLC6A1P30531 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SLC6A1P30531 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SLC6A1P30531 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SLC6A1P30531 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SLC6A1P30531 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC6A1P30531 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC6A1P30531 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SLC6A1P30531 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SLC6A1P30531 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SLC6A1P30531 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SLC6A1P30531 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC6A1P30531 WHAMMP3-201ENST00000611636 1609 ntBASIC20.8■□□□□ 0.92
SLC6A1P30531 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SLC6A1P30531 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC6A1P30531 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.8■□□□□ 0.92
SLC6A1P30531 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SLC6A1P30531 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms