Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SGCEO43556 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SGCEO43556 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SGCEO43556 AC091060.1-201ENST00000623524 1766 ntBASIC21.38■■□□□ 1.01
SGCEO43556 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
SGCEO43556 MIR4449-201ENST00000578365 66 ntBASIC21.38■■□□□ 1.01
SGCEO43556 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SGCEO43556 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SGCEO43556 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.38■■□□□ 1.01
SGCEO43556 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SGCEO43556 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SGCEO43556 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.37■■□□□ 1.01
SGCEO43556 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SGCEO43556 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.37■■□□□ 1.01
SGCEO43556 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.37■■□□□ 1.01
SGCEO43556 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SGCEO43556 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SGCEO43556 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SGCEO43556 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SGCEO43556 AC060814.1-201ENST00000554326 538 ntBASIC21.36■■□□□ 1.01
SGCEO43556 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SGCEO43556 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
SGCEO43556 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.35■■□□□ 1.01
SGCEO43556 AC092803.2-201ENST00000564287 1899 ntBASIC21.35■■□□□ 1.01
SGCEO43556 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SGCEO43556 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.35■■□□□ 1.01
SGCEO43556 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
SGCEO43556 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SGCEO43556 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SGCEO43556 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SGCEO43556 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SGCEO43556 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SGCEO43556 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SGCEO43556 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SGCEO43556 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SGCEO43556 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.33■■□□□ 1.01
SGCEO43556 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SGCEO43556 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SGCEO43556 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SGCEO43556 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
SGCEO43556 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.32■■□□□ 1
SGCEO43556 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.32■■□□□ 1
SGCEO43556 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.32■■□□□ 1
SGCEO43556 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.32■■□□□ 1
SGCEO43556 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SGCEO43556 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.32■■□□□ 1
SGCEO43556 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.32■■□□□ 1
SGCEO43556 AC145676.1-201ENST00000514988 2004 ntBASIC21.32■■□□□ 1
SGCEO43556 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SGCEO43556 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
SGCEO43556 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.31■■□□□ 1
SGCEO43556 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.31■■□□□ 1
SGCEO43556 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SGCEO43556 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SGCEO43556 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SGCEO43556 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.31■■□□□ 1
SGCEO43556 AC022413.1-201ENST00000624602 984 ntBASIC21.31■■□□□ 1
SGCEO43556 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SGCEO43556 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SGCEO43556 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SGCEO43556 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SGCEO43556 AL157400.5-201ENST00000507624 621 ntBASIC21.3■■□□□ 1
SGCEO43556 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.3■■□□□ 1
SGCEO43556 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.3■■□□□ 1
SGCEO43556 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.3■■□□□ 1
SGCEO43556 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SGCEO43556 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.29■■□□□ 1
SGCEO43556 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SGCEO43556 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SGCEO43556 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SGCEO43556 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.29■■□□□ 1
SGCEO43556 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.29■■□□□ 1
SGCEO43556 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.29■■□□□ 1
SGCEO43556 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SGCEO43556 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SGCEO43556 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
SGCEO43556 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SGCEO43556 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.28■■□□□ 1
SGCEO43556 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SGCEO43556 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.28■■□□□ 1
SGCEO43556 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.28■■□□□ 1
SGCEO43556 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.28■■□□□ 1
SGCEO43556 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.28■■□□□ 1
SGCEO43556 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SGCEO43556 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
SGCEO43556 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.27■■□□□ 1
SGCEO43556 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SGCEO43556 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SGCEO43556 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SGCEO43556 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.27■■□□□ 1
SGCEO43556 AC092296.2-201ENST00000589470 999 ntBASIC21.27■■□□□ 1
SGCEO43556 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.27■■□□□ 1
SGCEO43556 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SGCEO43556 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SGCEO43556 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SGCEO43556 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SGCEO43556 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SGCEO43556 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SGCEO43556 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.26■□□□□ 0.99
SGCEO43556 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms