Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
MSH4O15457 KRT18P60-201ENST00000312876 1297 ntBASIC27.59■■■□□ 2.01
MSH4O15457 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC27.59■■■□□ 2.01
MSH4O15457 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
MSH4O15457 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC27.59■■■□□ 2.01
MSH4O15457 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
MSH4O15457 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC27.58■■■□□ 2.01
MSH4O15457 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC27.58■■■□□ 2.01
MSH4O15457 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
MSH4O15457 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC27.58■■■□□ 2.01
MSH4O15457 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.58■■■□□ 2.01
MSH4O15457 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC27.57■■■□□ 2
MSH4O15457 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC27.57■■■□□ 2
MSH4O15457 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
MSH4O15457 AL592293.1-201ENST00000502889 1188 ntBASIC27.57■■■□□ 2
MSH4O15457 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC27.57■■■□□ 2
MSH4O15457 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC27.57■■■□□ 2
MSH4O15457 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27.57■■■□□ 2
MSH4O15457 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
MSH4O15457 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC27.56■■■□□ 2
MSH4O15457 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
MSH4O15457 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC27.55■■■□□ 2
MSH4O15457 HES4-204ENST00000484667 667 ntTSL 3 BASIC27.55■■■□□ 2
MSH4O15457 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC27.55■■■□□ 2
MSH4O15457 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
MSH4O15457 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
MSH4O15457 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC27.54■■■□□ 2
MSH4O15457 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
MSH4O15457 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
MSH4O15457 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.53■■■□□ 2
MSH4O15457 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
MSH4O15457 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC27.53■■■□□ 2
MSH4O15457 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
MSH4O15457 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
MSH4O15457 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC27.53■■■□□ 2
MSH4O15457 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
MSH4O15457 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
MSH4O15457 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC27.51■■□□□ 1.99
MSH4O15457 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
MSH4O15457 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH4O15457 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH4O15457 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
MSH4O15457 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.5■■□□□ 1.99
MSH4O15457 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC27.49■■□□□ 1.99
MSH4O15457 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.49■■□□□ 1.99
MSH4O15457 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
MSH4O15457 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
MSH4O15457 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
MSH4O15457 AC129492.7-201ENST00000622992 756 ntBASIC27.48■■□□□ 1.99
MSH4O15457 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH4O15457 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH4O15457 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH4O15457 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
MSH4O15457 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.47■■□□□ 1.99
MSH4O15457 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.47■■□□□ 1.99
MSH4O15457 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC27.47■■□□□ 1.99
MSH4O15457 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
MSH4O15457 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
MSH4O15457 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC27.46■■□□□ 1.99
MSH4O15457 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC27.46■■□□□ 1.99
MSH4O15457 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
MSH4O15457 AC012354.3-201ENST00000623734 483 ntBASIC27.45■■□□□ 1.98
MSH4O15457 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.98
MSH4O15457 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
MSH4O15457 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.45■■□□□ 1.98
MSH4O15457 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
MSH4O15457 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.45■■□□□ 1.98
MSH4O15457 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
MSH4O15457 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH4O15457 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH4O15457 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH4O15457 SPCS2P3-201ENST00000500401 656 ntBASIC27.44■■□□□ 1.98
MSH4O15457 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
MSH4O15457 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH4O15457 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH4O15457 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
MSH4O15457 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
MSH4O15457 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
MSH4O15457 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH4O15457 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC27.42■■□□□ 1.98
MSH4O15457 AC004987.1-201ENST00000428627 508 ntBASIC27.42■■□□□ 1.98
MSH4O15457 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC27.42■■□□□ 1.98
MSH4O15457 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH4O15457 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH4O15457 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
MSH4O15457 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
MSH4O15457 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
MSH4O15457 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC27.4■■□□□ 1.98
MSH4O15457 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
MSH4O15457 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
MSH4O15457 DUX4L9-201ENST00000449051 1259 ntBASIC27.4■■□□□ 1.98
MSH4O15457 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
MSH4O15457 ATP5G2P3-201ENST00000429083 425 ntBASIC27.39■■□□□ 1.98
MSH4O15457 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC27.39■■□□□ 1.98
MSH4O15457 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
MSH4O15457 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH4O15457 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC27.38■■□□□ 1.97
MSH4O15457 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH4O15457 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
MSH4O15457 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC27.38■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms