Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PROM1O43490 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PROM1O43490 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PROM1O43490 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.66■□□□□ 0.26
PROM1O43490 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PROM1O43490 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
PROM1O43490 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PROM1O43490 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
PROM1O43490 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
PROM1O43490 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.66■□□□□ 0.26
PROM1O43490 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.66■□□□□ 0.26
PROM1O43490 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
PROM1O43490 AL450487.1-201ENST00000426799 995 ntBASIC16.66■□□□□ 0.26
PROM1O43490 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.66■□□□□ 0.26
PROM1O43490 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.66■□□□□ 0.26
PROM1O43490 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.66■□□□□ 0.26
PROM1O43490 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.66■□□□□ 0.26
PROM1O43490 BNIP3P18-201ENST00000593976 575 ntBASIC16.66■□□□□ 0.26
PROM1O43490 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.66■□□□□ 0.26
PROM1O43490 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
PROM1O43490 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PROM1O43490 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PROM1O43490 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.66■□□□□ 0.26
PROM1O43490 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 AL138688.1-201ENST00000624851 1594 ntBASIC16.65■□□□□ 0.26
PROM1O43490 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PROM1O43490 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.65■□□□□ 0.26
PROM1O43490 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PROM1O43490 AC103564.2-201ENST00000432853 1299 ntBASIC16.65■□□□□ 0.26
PROM1O43490 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.65■□□□□ 0.26
PROM1O43490 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 AC002558.1-201ENST00000488906 803 ntBASIC16.65■□□□□ 0.26
PROM1O43490 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
PROM1O43490 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.65■□□□□ 0.26
PROM1O43490 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.65■□□□□ 0.26
PROM1O43490 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
PROM1O43490 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PROM1O43490 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PROM1O43490 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PROM1O43490 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.64■□□□□ 0.26
PROM1O43490 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.64■□□□□ 0.26
PROM1O43490 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PROM1O43490 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
PROM1O43490 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
PROM1O43490 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.64■□□□□ 0.25
PROM1O43490 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PROM1O43490 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.64■□□□□ 0.25
PROM1O43490 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PROM1O43490 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.64■□□□□ 0.25
PROM1O43490 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.64■□□□□ 0.25
PROM1O43490 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 POM121L3P-201ENST00000419331 1163 ntBASIC16.64■□□□□ 0.25
PROM1O43490 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.64■□□□□ 0.25
PROM1O43490 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms