Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SMARCAL1Q9NZC9 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMARCAL1Q9NZC9 KRT18P22-201ENST00000402024 1347 ntBASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 AC133561.5-201ENST00000635547 218 ntBASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCAL1Q9NZC9 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 FAM87A-204ENST00000613235 858 ntBASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCAL1Q9NZC9 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms