Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 AC142381.2-201ENST00000566120 298 ntBASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 AL121832.2-201ENST00000610979 668 ntBASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.41■□□□□ 0.22
VCX3AQ9NNX9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 KRT18P61-201ENST00000585825 1298 ntBASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCX3AQ9NNX9 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms