Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 CYMP-203ENST00000474680 1263 ntBASIC21.5■■□□□ 1.03
USP48Q86UV5 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.5■■□□□ 1.03
USP48Q86UV5 RFPL4AP1-201ENST00000530883 850 ntBASIC21.5■■□□□ 1.03
USP48Q86UV5 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21.5■■□□□ 1.03
USP48Q86UV5 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC21.5■■□□□ 1.03
USP48Q86UV5 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 RNF151-202ENST00000569210 853 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.5■■□□□ 1.03
USP48Q86UV5 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.5■■□□□ 1.03
USP48Q86UV5 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.5■■□□□ 1.03
USP48Q86UV5 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.5■■□□□ 1.03
USP48Q86UV5 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.49■■□□□ 1.03
USP48Q86UV5 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USP48Q86UV5 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.49■■□□□ 1.03
USP48Q86UV5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USP48Q86UV5 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
USP48Q86UV5 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC21.49■■□□□ 1.03
USP48Q86UV5 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC21.49■■□□□ 1.03
USP48Q86UV5 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.49■■□□□ 1.03
USP48Q86UV5 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.49■■□□□ 1.03
USP48Q86UV5 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.49■■□□□ 1.03
USP48Q86UV5 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC21.49■■□□□ 1.03
USP48Q86UV5 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.49■■□□□ 1.03
USP48Q86UV5 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USP48Q86UV5 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USP48Q86UV5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USP48Q86UV5 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USP48Q86UV5 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.49■■□□□ 1.03
USP48Q86UV5 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.49■■□□□ 1.03
USP48Q86UV5 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.49■■□□□ 1.03
USP48Q86UV5 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
USP48Q86UV5 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
USP48Q86UV5 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USP48Q86UV5 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.49■■□□□ 1.03
USP48Q86UV5 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.48■■□□□ 1.03
USP48Q86UV5 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.48■■□□□ 1.03
USP48Q86UV5 AC009102.3-201ENST00000623118 1491 ntBASIC21.48■■□□□ 1.03
USP48Q86UV5 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
USP48Q86UV5 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.48■■□□□ 1.03
USP48Q86UV5 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC21.48■■□□□ 1.03
USP48Q86UV5 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.48■■□□□ 1.03
USP48Q86UV5 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
USP48Q86UV5 AC064836.3-201ENST00000607928 673 ntBASIC21.48■■□□□ 1.03
USP48Q86UV5 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.48■■□□□ 1.03
USP48Q86UV5 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
USP48Q86UV5 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP48Q86UV5 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.47■■□□□ 1.03
USP48Q86UV5 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
USP48Q86UV5 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.47■■□□□ 1.03
USP48Q86UV5 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.47■■□□□ 1.03
USP48Q86UV5 KRT18P2-201ENST00000447938 1258 ntBASIC21.47■■□□□ 1.03
USP48Q86UV5 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC21.47■■□□□ 1.03
USP48Q86UV5 CFL1-202ENST00000524553 860 ntTSL 2 BASIC21.47■■□□□ 1.03
USP48Q86UV5 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms