Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
H3F3AP84243 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.71■□□□□ 0.1
H3F3AP84243 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
H3F3AP84243 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.71■□□□□ 0.1
H3F3AP84243 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
H3F3AP84243 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
H3F3AP84243 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
H3F3AP84243 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
H3F3AP84243 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.71■□□□□ 0.1
H3F3AP84243 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 AL138688.1-201ENST00000624851 1594 ntBASIC15.7■□□□□ 0.1
H3F3AP84243 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.7■□□□□ 0.1
H3F3AP84243 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 PCDHB18P-201ENST00000524813 2368 ntBASIC15.7■□□□□ 0.1
H3F3AP84243 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.7■□□□□ 0.1
H3F3AP84243 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.7■□□□□ 0.1
H3F3AP84243 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.7■□□□□ 0.1
H3F3AP84243 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.7■□□□□ 0.1
H3F3AP84243 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.7■□□□□ 0.1
H3F3AP84243 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.7■□□□□ 0.1
H3F3AP84243 ABCD1P5-201ENST00000445663 754 ntBASIC15.7■□□□□ 0.1
H3F3AP84243 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.7■□□□□ 0.1
H3F3AP84243 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.7■□□□□ 0.1
H3F3AP84243 AC091304.2-201ENST00000564639 760 ntBASIC15.7■□□□□ 0.1
H3F3AP84243 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
H3F3AP84243 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
H3F3AP84243 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.7■□□□□ 0.1
H3F3AP84243 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
H3F3AP84243 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
H3F3AP84243 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
H3F3AP84243 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.69■□□□□ 0.1
H3F3AP84243 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
H3F3AP84243 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
H3F3AP84243 DUSP5P1-201ENST00000441325 1139 ntBASIC15.69■□□□□ 0.1
H3F3AP84243 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.69■□□□□ 0.1
H3F3AP84243 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
H3F3AP84243 AC132008.2-207ENST00000454517 770 ntBASIC15.69■□□□□ 0.1
H3F3AP84243 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.69■□□□□ 0.1
H3F3AP84243 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.69■□□□□ 0.1
H3F3AP84243 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.69■□□□□ 0.1
H3F3AP84243 AC111152.3-201ENST00000569699 673 ntBASIC15.69■□□□□ 0.1
H3F3AP84243 STK25P1-201ENST00000585406 838 ntBASIC15.69■□□□□ 0.1
H3F3AP84243 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 AL139327.4-201ENST00000612362 153 ntBASIC15.69■□□□□ 0.1
H3F3AP84243 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 AC012313.10-201ENST00000623509 926 ntBASIC15.69■□□□□ 0.1
H3F3AP84243 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
H3F3AP84243 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
H3F3AP84243 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
H3F3AP84243 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
H3F3AP84243 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
H3F3AP84243 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
H3F3AP84243 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.68■□□□□ 0.1
H3F3AP84243 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 AC132938.5-201ENST00000624980 1813 ntBASIC15.68■□□□□ 0.1
H3F3AP84243 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms