Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC12.52□□□□□ -0.41
PRKDCP78527 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
PRKDCP78527 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC12.52□□□□□ -0.41
PRKDCP78527 KRT223P-202ENST00000449164 1292 ntBASIC12.52□□□□□ -0.41
PRKDCP78527 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.52□□□□□ -0.41
PRKDCP78527 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC12.52□□□□□ -0.41
PRKDCP78527 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC12.52□□□□□ -0.41
PRKDCP78527 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC12.52□□□□□ -0.41
PRKDCP78527 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.52□□□□□ -0.41
PRKDCP78527 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC12.52□□□□□ -0.41
PRKDCP78527 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
PRKDCP78527 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC12.52□□□□□ -0.41
PRKDCP78527 ESPNP-201ENST00000270691 2015 ntBASIC12.52□□□□□ -0.41
PRKDCP78527 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC12.52□□□□□ -0.41
PRKDCP78527 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PRKDCP78527 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 FXNP2-201ENST00000411625 547 ntBASIC12.51□□□□□ -0.41
PRKDCP78527 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.51□□□□□ -0.41
PRKDCP78527 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
PRKDCP78527 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.51□□□□□ -0.41
PRKDCP78527 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC12.51□□□□□ -0.41
PRKDCP78527 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
PRKDCP78527 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PRKDCP78527 AC092506.1-202ENST00000401022 528 ntBASIC12.51□□□□□ -0.41
PRKDCP78527 AC103564.2-201ENST00000432853 1299 ntBASIC12.51□□□□□ -0.41
PRKDCP78527 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.51□□□□□ -0.41
PRKDCP78527 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC12.51□□□□□ -0.41
PRKDCP78527 APOC4-201ENST00000591600 348 ntTSL 3 BASIC12.51□□□□□ -0.41
PRKDCP78527 TEX28P1-201ENST00000613479 1221 ntBASIC12.51□□□□□ -0.41
PRKDCP78527 AP3S2-216ENST00000617003 1561 ntBASIC12.51□□□□□ -0.41
PRKDCP78527 TEX28P2-201ENST00000617764 1221 ntBASIC12.51□□□□□ -0.41
PRKDCP78527 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 MMP17-203ENST00000535004 719 ntTSL 3 BASIC12.5□□□□□ -0.41
PRKDCP78527 RN7SL190P-201ENST00000582519 257 ntBASIC12.5□□□□□ -0.41
PRKDCP78527 RPSAP52-203ENST00000622976 1023 ntBASIC12.5□□□□□ -0.41
PRKDCP78527 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
PRKDCP78527 WASH6P-202ENST00000359512 1437 ntBASIC12.5□□□□□ -0.41
PRKDCP78527 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms