Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PTPN4P29074 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN4P29074 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
PTPN4P29074 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.67■□□□□ 0.42
PTPN4P29074 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PTPN4P29074 AC036111.1-201ENST00000533973 1582 ntBASIC17.67■□□□□ 0.42
PTPN4P29074 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PTPN4P29074 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
PTPN4P29074 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.67■□□□□ 0.42
PTPN4P29074 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 MIR3180-5-201ENST00000583743 153 ntBASIC17.67■□□□□ 0.42
PTPN4P29074 AC024243.1-201ENST00000609234 778 ntBASIC17.67■□□□□ 0.42
PTPN4P29074 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.67■□□□□ 0.42
PTPN4P29074 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.67■□□□□ 0.42
PTPN4P29074 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PTPN4P29074 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN4P29074 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN4P29074 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
PTPN4P29074 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PTPN4P29074 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
PTPN4P29074 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PTPN4P29074 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.66■□□□□ 0.42
PTPN4P29074 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PTPN4P29074 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.66■□□□□ 0.42
PTPN4P29074 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.66■□□□□ 0.42
PTPN4P29074 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.66■□□□□ 0.42
PTPN4P29074 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.66■□□□□ 0.42
PTPN4P29074 AC106886.4-201ENST00000623557 2502 ntBASIC17.66■□□□□ 0.42
PTPN4P29074 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 AGGF1P2-201ENST00000426656 2106 ntBASIC17.66■□□□□ 0.42
PTPN4P29074 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PTPN4P29074 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.66■□□□□ 0.42
PTPN4P29074 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.66■□□□□ 0.42
PTPN4P29074 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN4P29074 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.65■□□□□ 0.42
PTPN4P29074 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
PTPN4P29074 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN4P29074 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PTPN4P29074 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PTPN4P29074 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.65■□□□□ 0.42
PTPN4P29074 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.65■□□□□ 0.42
PTPN4P29074 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN4P29074 SPDYE13P-201ENST00000445314 798 ntBASIC17.65■□□□□ 0.42
PTPN4P29074 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.65■□□□□ 0.42
PTPN4P29074 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 PCDHA14-201ENST00000506751 2298 ntBASIC17.65■□□□□ 0.42
PTPN4P29074 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms