Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 MTCL1P1-201ENST00000446207 792 ntBASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 UNC93B6-202ENST00000528242 690 ntBASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
NOTCH3Q9UM47 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 AC011467.2-201ENST00000598425 242 ntBASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 FUOM-202ENST00000368551 628 ntTSL 3 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 AC068587.9-201ENST00000641814 219 ntBASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC13.59□□□□□ -0.23
NOTCH3Q9UM47 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 MCCD1P2-201ENST00000423228 335 ntBASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 GPX1P2-201ENST00000429271 606 ntBASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.58□□□□□ -0.23
NOTCH3Q9UM47 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NOTCH3Q9UM47 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms