Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SLC26A6-217ENST00000480524 2727 ntTSL 1 (best)12□□□□□ -0.497e-11■■□□□ 11.6
UPF1Q92900 PA2G4-206ENST00000552766 1085 ntTSL 5 BASIC16.54■□□□□ 0.243e-15■■□□□ 11.6
UPF1Q92900 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.23e-15■■□□□ 11.6
UPF1Q92900 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.85■□□□□ 0.612e-14■■□□□ 11.6
UPF1Q92900 NCBP2-210ENST00000467803 771 ntTSL 317.61■□□□□ 0.412e-14■■□□□ 11.6
UPF1Q92900 NCBP2-205ENST00000428425 2220 ntTSL 1 (best)16.37■□□□□ 0.212e-14■■□□□ 11.6
UPF1Q92900 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.19■□□□□ 0.182e-14■■□□□ 11.6
UPF1Q92900 NCBP2-201ENST00000321256 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.12e-14■■□□□ 11.6
UPF1Q92900 NCBP2-209ENST00000463783 4161 ntTSL 1 (best)9.67□□□□□ -0.862e-14■■□□□ 11.6
UPF1Q92900 MLLT6-204ENST00000615441 395 ntTSL 319.65■□□□□ 0.745e-50■■□□□ 11.6
UPF1Q92900 MLLT6-205ENST00000615741 2937 nt15.35■□□□□ 0.055e-50■■□□□ 11.6
UPF1Q92900 MLLT6-208ENST00000619356 3868 ntTSL 1 (best)15.14■□□□□ 0.015e-50■■□□□ 11.6
UPF1Q92900 MRPS35-203ENST00000538315 1715 ntTSL 2 BASIC14.83□□□□□ -0.038e-8■■□□□ 11.6
UPF1Q92900 MRPS35-201ENST00000081029 1888 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.148e-8■■□□□ 11.6
UPF1Q92900 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.633e-7■■□□□ 11.5
UPF1Q92900 ANP32A-202ENST00000409628 2001 ntTSL 517.37■□□□□ 0.373e-7■■□□□ 11.5
UPF1Q92900 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC9.15□□□□□ -0.942e-8■■□□□ 11.5
UPF1Q92900 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.232e-8■■□□□ 11.5
UPF1Q92900 MRPL43-214ENST00000523148 844 ntTSL 332.58■■■□□ 2.815e-6■■□□□ 11.5
UPF1Q92900 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC26.11■■□□□ 1.775e-6■■□□□ 11.5
UPF1Q92900 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.693e-12■■□□□ 11.5
UPF1Q92900 SYS1-203ENST00000414310 795 ntTSL 3 BASIC25.05■■□□□ 1.65e-6■■□□□ 11.5
UPF1Q92900 SYS1-206ENST00000457307 941 ntTSL 1 (best)25.05■■□□□ 1.65e-6■■□□□ 11.5
UPF1Q92900 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.545e-6■■□□□ 11.5
UPF1Q92900 PLEKHM2-204ENST00000477849 1057 ntTSL 522.28■■□□□ 1.165e-6■■□□□ 11.5
UPF1Q92900 ZNF101-206ENST00000585565 581 ntTSL 321.62■■□□□ 1.052e-6■■□□□ 11.5
UPF1Q92900 ZNF101-201ENST00000318110 1830 ntTSL 519.99■□□□□ 0.795e-6■■□□□ 11.5
UPF1Q92900 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.745e-6■■□□□ 11.5
UPF1Q92900 ARHGEF40-208ENST00000557498 794 ntTSL 217.68■□□□□ 0.427e-11■■□□□ 11.5
UPF1Q92900 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.227e-11■■□□□ 11.5
UPF1Q92900 MBD3-203ENST00000585903 415 ntTSL 516.09■□□□□ 0.175e-6■■□□□ 11.5
UPF1Q92900 ARHGEF40-203ENST00000554514 2928 ntTSL 1 (best)15.74■□□□□ 0.117e-11■■□□□ 11.5
UPF1Q92900 ARHGEF40-202ENST00000553709 5204 ntTSL 1 (best)15.22■□□□□ 0.037e-11■■□□□ 11.5
UPF1Q92900 ARHGEF40-207ENST00000556399 4902 ntTSL 1 (best)14.67□□□□□ -0.067e-11■■□□□ 11.5
UPF1Q92900 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.152e-6■■□□□ 11.5
UPF1Q92900 KIAA1191-203ENST00000393728 2243 ntTSL 1 (best)13.67□□□□□ -0.222e-6■■□□□ 11.5
UPF1Q92900 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC12.85□□□□□ -0.352e-6■■□□□ 11.5
UPF1Q92900 TMEM140-202ENST00000466307 392 ntTSL 511.79□□□□□ -0.525e-6■■□□□ 11.5
UPF1Q92900 SYS1-208ENST00000479779 1022 ntTSL 211.4□□□□□ -0.585e-6■■□□□ 11.5
UPF1Q92900 KIAA1191-212ENST00000614420 2631 ntTSL 5 BASIC11.09□□□□□ -0.632e-6■■□□□ 11.5
UPF1Q92900 KIAA1191-213ENST00000620366 2452 ntTSL 3 BASIC11.02□□□□□ -0.652e-6■■□□□ 11.5
UPF1Q92900 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.052e-6■■□□□ 11.5
UPF1Q92900 PTMA-205ENST00000410064 814 ntTSL 2 BASIC31.32■■■□□ 2.63e-10■■□□□ 11.5
UPF1Q92900 PTMA-211ENST00000468027 621 ntTSL 1 (best)18.17■□□□□ 0.53e-10■■□□□ 11.5
UPF1Q92900 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.443e-6■■□□□ 11.5
UPF1Q92900 PTMA-210ENST00000467816 378 ntTSL 217.37■□□□□ 0.373e-10■■□□□ 11.5
UPF1Q92900 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.33e-6■■□□□ 11.5
UPF1Q92900 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.07■□□□□ 0.163e-6■■□□□ 11.5
UPF1Q92900 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.383e-10■■□□□ 11.5
UPF1Q92900 TLK2-208ENST00000580203 3536 nt8.77□□□□□ -1.013e-6■■□□□ 11.5
UPF1Q92900 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.32□□□□□ -1.43e-6■■□□□ 11.5
UPF1Q92900 ACTR3-205ENST00000478928 5965 ntTSL 23.92□□□□□ -1.783e-10■■□□□ 11.5
UPF1Q92900 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.526e-7■■□□□ 11.5
UPF1Q92900 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC29.02■■■□□ 2.246e-7■■□□□ 11.5
UPF1Q92900 CASP9-204ENST00000400777 1878 ntTSL 1 (best)20.01■□□□□ 0.796e-7■■□□□ 11.5
UPF1Q92900 CASP9-205ENST00000424908 740 ntTSL 317.76■□□□□ 0.436e-7■■□□□ 11.5
UPF1Q92900 CNIH1-202ENST00000395573 1233 ntTSL 1 (best) BASIC16.28■□□□□ 0.26e-7■■□□□ 11.5
UPF1Q92900 B2M-202ENST00000544417 933 ntTSL 5 BASIC17.39■□□□□ 0.374e-7■■□□□ 11.5
UPF1Q92900 B2M-212ENST00000561424 604 ntTSL 314.43□□□□□ -0.14e-7■■□□□ 11.5
UPF1Q92900 B2M-211ENST00000561139 717 ntTSL 311.54□□□□□ -0.564e-7■■□□□ 11.5
UPF1Q92900 B2M-201ENST00000349264 732 ntTSL 310.99□□□□□ -0.654e-7■■□□□ 11.5
UPF1Q92900 B2M-205ENST00000559220 580 ntTSL 510.33□□□□□ -0.764e-7■■□□□ 11.5
UPF1Q92900 B2M-204ENST00000558401 1715 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.814e-7■■□□□ 11.5
UPF1Q92900 CLDN1-201ENST00000295522 3481 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.855e-10■■□□□ 11.5
UPF1Q92900 B2M-213ENST00000623550 2329 nt7.64□□□□□ -1.194e-7■■□□□ 11.5
UPF1Q92900 ELP3-202ENST00000380353 3078 ntTSL 2 BASIC11.47□□□□□ -0.573e-6■■□□□ 11.5
UPF1Q92900 ELP3-219ENST00000537665 3053 ntTSL 2 BASIC11.47□□□□□ -0.573e-6■■□□□ 11.5
UPF1Q92900 ELP3-201ENST00000256398 3452 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.893e-6■■□□□ 11.5
UPF1Q92900 ELP3-210ENST00000521015 3158 ntTSL 1 (best) BASIC8.88□□□□□ -0.993e-6■■□□□ 11.5
UPF1Q92900 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.172e-10■■□□□ 11.5
UPF1Q92900 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC7.63□□□□□ -1.192e-10■■□□□ 11.5
UPF1Q92900 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC7.51□□□□□ -1.212e-10■■□□□ 11.5
UPF1Q92900 AP2B1-219ENST00000620039 3428 ntTSL 1 (best)5.9□□□□□ -1.472e-10■■□□□ 11.5
UPF1Q92900 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.566e-8■■□□□ 11.5
UPF1Q92900 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.58e-14■■□□□ 11.5
UPF1Q92900 METTL2B-205ENST00000481392 564 ntTSL 316.51■□□□□ 0.238e-14■■□□□ 11.5
UPF1Q92900 SNRNP200-208ENST00000497539 2666 ntTSL 1 (best)12.67□□□□□ -0.388e-14■■□□□ 11.5
UPF1Q92900 METTL2B-201ENST00000262432 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.438e-14■■□□□ 11.5
UPF1Q92900 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.688e-14■■□□□ 11.5
UPF1Q92900 AASDHPPT-205ENST00000534152 5145 ntTSL 1 (best)2.95□□□□□ -1.948e-14■■□□□ 11.5
UPF1Q92900 CD46-219ENST00000636114 2098 ntTSL 55.14□□□□□ -1.595e-18■■□□□ 11.5
UPF1Q92900 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.36■■□□□ 1.492e-6■■□□□ 11.4
UPF1Q92900 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC23.1■■□□□ 1.295e-7■■□□□ 11.4
UPF1Q92900 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.83■□□□□ 0.925e-7■■□□□ 11.4
UPF1Q92900 MECP2-226ENST00000640414 897 ntTSL 5 BASIC18.5■□□□□ 0.555e-7■■□□□ 11.4
UPF1Q92900 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC18.1■□□□□ 0.495e-7■■□□□ 11.4
UPF1Q92900 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC17.85■□□□□ 0.455e-7■■□□□ 11.4
UPF1Q92900 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.49■■□□□ 1.674e-9■■□□□ 11.4
UPF1Q92900 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.85■■□□□ 1.414e-9■■□□□ 11.4
UPF1Q92900 RANBP10-203ENST00000602506 2756 ntTSL 218.72■□□□□ 0.594e-9■■□□□ 11.4
UPF1Q92900 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.022e-6■■□□□ 11.4
UPF1Q92900 PTP4A2-210ENST00000528253 806 ntTSL 59.96□□□□□ -0.829e-11■■□□□ 11.4
UPF1Q92900 LINC01033-201ENST00000504609 735 ntTSL 5 BASIC15.87■□□□□ 0.132e-15■■□□□ 11.4
UPF1Q92900 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC8.21□□□□□ -1.12e-15■■□□□ 11.4
UPF1Q92900 HK1-205ENST00000436817 1042 ntTSL 521.32■■□□□ 19e-10■■□□□ 11.4
UPF1Q92900 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.672e-7■■□□□ 11.4
UPF1Q92900 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.93e-8■■□□□ 11.4
UPF1Q92900 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.715e-7■■□□□ 11.4
UPF1Q92900 UROD-221ENST00000636293 1102 ntTSL 5 BASIC17.36■□□□□ 0.375e-7■■□□□ 11.4
UPF1Q92900 UROD-222ENST00000636836 1173 ntTSL 5 BASIC16.76■□□□□ 0.275e-7■■□□□ 11.4
Retrieved 100 of 15,879 protein–RNA pairs in 81.8 ms