RNA–Protein interactions for RNA: ENST00000554514.1

ARHGEF40-203, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 2,928 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-203ENST00000554514 NISCHQ9Y2I1 1504 aa32.44■■■□□ 2.78
ARHGEF40-203ENST00000554514 SHROOM4Q9ULL8 1493 aa28■■■□□ 2.07
ARHGEF40-203ENST00000554514 CCDC180Q9P1Z9 1646 aa27.47■■□□□ 1.99
ARHGEF40-203ENST00000554514 SUPT5HO00267 1087 aaKnown RBP27.43■■□□□ 1.98
ARHGEF40-203ENST00000554514 ZCCHC6Q5VYS8 1495 aaKnown RBP27.4■■□□□ 1.98
ARHGEF40-203ENST00000554514 DCAF8L2P0C7V8 631 aa27.35■■□□□ 1.97
ARHGEF40-203ENST00000554514 CHIC1Q5VXU3 224 aa26.47■■□□□ 1.83
ARHGEF40-203ENST00000554514 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
ARHGEF40-203ENST00000554514 MYO15BQ96JP2 1530 aa26.37■■□□□ 1.81
ARHGEF40-203ENST00000554514 SCRIBQ14160 1630 aa26.01■■□□□ 1.75
ARHGEF40-203ENST00000554514 ABCC9O60706 1549 aa25.85■■□□□ 1.73
ARHGEF40-203ENST00000554514 LOC105371045A0A1W2PR82 267 aa25.83■■□□□ 1.73
ARHGEF40-203ENST00000554514 PCGF6Q9BYE7 350 aa25.77■■□□□ 1.72
ARHGEF40-203ENST00000554514 RSF1Q96T23 1441 aaPredicted RBP25.71■■□□□ 1.71
ARHGEF40-203ENST00000554514 HRCP23327 699 aa25.58■■□□□ 1.69
ARHGEF40-203ENST00000554514 RB1CC1Q8TDY2 1594 aa25.48■■□□□ 1.67
ARHGEF40-203ENST00000554514 NACADO15069 1562 aa25.46■■□□□ 1.67
ARHGEF40-203ENST00000554514 TRIM41Q8WV44 630 aa25.45■■□□□ 1.67
ARHGEF40-203ENST00000554514 CECR2Q9BXF3 1484 aa25.42■■□□□ 1.66
ARHGEF40-203ENST00000554514 FAM9AQ8IZU1 332 aaPredicted RBP25.41■■□□□ 1.66
ARHGEF40-203ENST00000554514 EHMT2Q96KQ7 1210 aa25.35■■□□□ 1.65
ARHGEF40-203ENST00000554514 MROH2BQ7Z745 1585 aa25.29■■□□□ 1.64
ARHGEF40-203ENST00000554514 PPARGC1BQ86YN6 1023 aaKnown RBP25.25■■□□□ 1.63
ARHGEF40-203ENST00000554514 WIZO95785 1651 aa25.17■■□□□ 1.62
ARHGEF40-203ENST00000554514 TRIM26Q12899 539 aaPredicted RBP25.13■■□□□ 1.61
ARHGEF40-203ENST00000554514 BAZ1AQ9NRL2 1556 aaPredicted RBP24.91■■□□□ 1.58
ARHGEF40-203ENST00000554514 PABPN1Q86U42 306 aaKnown RBP eCLIP24.77■■□□□ 1.56
ARHGEF40-203ENST00000554514 UNC13AQ9UPW8 1703 aa24.74■■□□□ 1.55
ARHGEF40-203ENST00000554514 SMARCA4P51532 1647 aa24.72■■□□□ 1.55
ARHGEF40-203ENST00000554514 TOP2AP11388 1531 aaKnown RBP24.68■■□□□ 1.54
ARHGEF40-203ENST00000554514 ABCC8Q09428 1581 aa24.67■■□□□ 1.54
ARHGEF40-203ENST00000554514 CCDC88BA6NC98 1476 aa24.66■■□□□ 1.54
ARHGEF40-203ENST00000554514 EIF4G1Q04637 1599 aaKnown RBP24.65■■□□□ 1.54
ARHGEF40-203ENST00000554514 SMARCA2P51531 1590 aa24.57■■□□□ 1.52
ARHGEF40-203ENST00000554514 TTBK1Q5TCY1 1321 aaPredicted RBP24.49■■□□□ 1.51
ARHGEF40-203ENST00000554514 ZEB1P37275 1124 aaPredicted RBP24.48■■□□□ 1.51
ARHGEF40-203ENST00000554514 BICRAQ9NZM4 1560 aa24.43■■□□□ 1.5
ARHGEF40-203ENST00000554514 SOGA1O94964 1423 aa24.42■■□□□ 1.5
ARHGEF40-203ENST00000554514 UBTFP17480 764 aaKnown RBP24.31■■□□□ 1.48
ARHGEF40-203ENST00000554514 RUSC2Q8N2Y8 1516 aa24.31■■□□□ 1.48
ARHGEF40-203ENST00000554514 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.3■■□□□ 1.48
ARHGEF40-203ENST00000554514 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
ARHGEF40-203ENST00000554514 CEP162Q5TB80 1403 aa24.26■■□□□ 1.47
ARHGEF40-203ENST00000554514 CCER1Q8TC90 406 aaPredicted RBP24.2■■□□□ 1.46
ARHGEF40-203ENST00000554514 WRNQ14191 1432 aaPredicted RBP eCLIP24.18■■□□□ 1.46
ARHGEF40-203ENST00000554514 TNIKQ9UKE5 1360 aa24.15■■□□□ 1.46
ARHGEF40-203ENST00000554514 ATAD2BQ9ULI0 1458 aa24.12■■□□□ 1.45
ARHGEF40-203ENST00000554514 PEG3Q9GZU2 1588 aa24.11■■□□□ 1.45
ARHGEF40-203ENST00000554514 BAZ1BQ9UIG0 1483 aaKnown RBP24.1■■□□□ 1.45
ARHGEF40-203ENST00000554514 EEA1Q15075 1411 aa24.1■■□□□ 1.45
ARHGEF40-203ENST00000554514 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
ARHGEF40-203ENST00000554514 GOLGA3Q08378 1498 aa24.04■■□□□ 1.44
ARHGEF40-203ENST00000554514 RANGAP1P46060 587 aaPredicted RBP24.03■■□□□ 1.44
ARHGEF40-203ENST00000554514 CEP164Q9UPV0 1460 aa23.89■■□□□ 1.41
ARHGEF40-203ENST00000554514 CLIP1P30622 1438 aa23.82■■□□□ 1.4
ARHGEF40-203ENST00000554514 RAPGEF2Q9Y4G8 1499 aa23.8■■□□□ 1.4
ARHGEF40-203ENST00000554514 HNRNPUL2Q1KMD3 747 aaKnown RBP23.79■■□□□ 1.4
ARHGEF40-203ENST00000554514 KIF21BO75037 1637 aa23.78■■□□□ 1.4
ARHGEF40-203ENST00000554514 APLP2Q06481 763 aa23.73■■□□□ 1.39
ARHGEF40-203ENST00000554514 TOP2BQ02880 1626 aa23.68■■□□□ 1.38
ARHGEF40-203ENST00000554514 VPS8Q8N3P4 1428 aa23.65■■□□□ 1.38
ARHGEF40-203ENST00000554514 DIEXFQ68CQ4 756 aaKnown RBP23.64■■□□□ 1.38
ARHGEF40-203ENST00000554514 SCAF1Q9H7N4 1312 aaKnown RBP23.61■■□□□ 1.37
ARHGEF40-203ENST00000554514 NCAPD3P42695 1498 aa23.59■■□□□ 1.37
ARHGEF40-203ENST00000554514 BIVM-ERCC5R4GMW8 1640 aa23.55■■□□□ 1.36
ARHGEF40-203ENST00000554514 HMGXB3Q12766 1538 aa23.55■■□□□ 1.36
ARHGEF40-203ENST00000554514 CUX1P39880 1505 aa23.53■■□□□ 1.36
ARHGEF40-203ENST00000554514 PRXQ9BXM0 1461 aa23.46■■□□□ 1.35
ARHGEF40-203ENST00000554514 ZNF316A6NFI3 1004 aaPredicted RBP23.43■■□□□ 1.34
ARHGEF40-203ENST00000554514 KIF27Q86VH2 1401 aa23.43■■□□□ 1.34
ARHGEF40-203ENST00000554514 CFTRP13569 1480 aa23.42■■□□□ 1.34
ARHGEF40-203ENST00000554514 NEUROD1Q13562 356 aa23.4■■□□□ 1.34
ARHGEF40-203ENST00000554514 ERICH3Q5RHP9 1530 aa23.4■■□□□ 1.34
ARHGEF40-203ENST00000554514 ARAP1Q96P48 1450 aa23.39■■□□□ 1.34
ARHGEF40-203ENST00000554514 KANK4Q5T7N3 995 aaPredicted RBP23.39■■□□□ 1.33
ARHGEF40-203ENST00000554514 ACIN1Q9UKV3 1341 aaKnown RBP23.36■■□□□ 1.33
ARHGEF40-203ENST00000554514 CUX2O14529 1486 aa23.28■■□□□ 1.32
ARHGEF40-203ENST00000554514 YTHDC1Q96MU7 727 aaKnown RBP23.26■■□□□ 1.31
ARHGEF40-203ENST00000554514 CENPBP07199 599 aaPredicted RBP23.26■■□□□ 1.31
ARHGEF40-203ENST00000554514 ITGAEP38570 1179 aa23.25■■□□□ 1.31
ARHGEF40-203ENST00000554514 CADPSQ9ULU8 1353 aa23.23■■□□□ 1.31
ARHGEF40-203ENST00000554514 ARHGAP35Q9NRY4 1499 aa23.2■■□□□ 1.3
ARHGEF40-203ENST00000554514 IGF1RP08069 1367 aa23.18■■□□□ 1.3
ARHGEF40-203ENST00000554514 GTF3C3Q9Y5Q9 886 aa23.18■■□□□ 1.3
ARHGEF40-203ENST00000554514 MIER1Q8N108 512 aa23.15■■□□□ 1.3
ARHGEF40-203ENST00000554514 FGD5Q6ZNL6 1462 aa23.15■■□□□ 1.3
ARHGEF40-203ENST00000554514 PRDM2Q13029 1718 aa23.13■■□□□ 1.29
ARHGEF40-203ENST00000554514 P3H3Q8IVL6 736 aa23.12■■□□□ 1.29
ARHGEF40-203ENST00000554514 CARMIL1Q5VZK9 1371 aa23.12■■□□□ 1.29
ARHGEF40-203ENST00000554514 DHX57Q6P158 1386 aaKnown RBP23.12■■□□□ 1.29
ARHGEF40-203ENST00000554514 CC2D2AQ9P2K1 1620 aa23.11■■□□□ 1.29
ARHGEF40-203ENST00000554514 ATP1B4Q9UN42 357 aaPredicted RBP23.11■■□□□ 1.29
ARHGEF40-203ENST00000554514 CCNB3Q8WWL7 1395 aa23.06■■□□□ 1.28
ARHGEF40-203ENST00000554514 RRBP1Q9P2E9 1410 aaKnown RBP23.05■■□□□ 1.28
ARHGEF40-203ENST00000554514 PELP1Q8IZL8 1130 aaKnown RBP23.04■■□□□ 1.28
ARHGEF40-203ENST00000554514 FANCD2Q9BXW9 1451 aa23.03■■□□□ 1.28
ARHGEF40-203ENST00000554514 RAD54L2Q9Y4B4 1467 aa22.99■■□□□ 1.27
ARHGEF40-203ENST00000554514 NESP48681 1621 aa22.97■■□□□ 1.27
ARHGEF40-203ENST00000554514 CLSPNQ9HAW4 1339 aa22.95■■□□□ 1.26
ARHGEF40-203ENST00000554514 FAM50AQ14320 339 aaKnown RBP22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms