RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 NISCHQ9Y2I1 1504 aa18.22■□□□□ 0.51
CLDN1-201ENST00000295522 HRCP23327 699 aa17.15■□□□□ 0.34
CLDN1-201ENST00000295522 PPARGC1BQ86YN6 1023 aaKnown RBP17.08■□□□□ 0.33
CLDN1-201ENST00000295522 PCGF6Q9BYE7 350 aa17.04■□□□□ 0.32
CLDN1-201ENST00000295522 SUPT5HO00267 1087 aaKnown RBP16.95■□□□□ 0.3
CLDN1-201ENST00000295522 SHROOM4Q9ULL8 1493 aa16.86■□□□□ 0.29
CLDN1-201ENST00000295522 PELP1Q8IZL8 1130 aaKnown RBP16.83■□□□□ 0.28
CLDN1-201ENST00000295522 SCAF1Q9H7N4 1312 aaKnown RBP16.42■□□□□ 0.22
CLDN1-201ENST00000295522 DCAF8L2P0C7V8 631 aa16.34■□□□□ 0.21
CLDN1-201ENST00000295522 MYO15BQ96JP2 1530 aa16.34■□□□□ 0.21
CLDN1-201ENST00000295522 CHIC1Q5VXU3 224 aa16.33■□□□□ 0.21
CLDN1-201ENST00000295522 LOC105371045A0A1W2PR82 267 aa16.25■□□□□ 0.19
CLDN1-201ENST00000295522 MYT1Q01538 1121 aa16.19■□□□□ 0.18
CLDN1-201ENST00000295522 TRIM26Q12899 539 aaPredicted RBP16.14■□□□□ 0.17
CLDN1-201ENST00000295522 ZEB1P37275 1124 aaPredicted RBP16.04■□□□□ 0.16
CLDN1-201ENST00000295522 EHMT2Q96KQ7 1210 aa16.02■□□□□ 0.15
CLDN1-201ENST00000295522 GTF3C3Q9Y5Q9 886 aa16■□□□□ 0.15
CLDN1-201ENST00000295522 NEUROD1Q13562 356 aa15.96■□□□□ 0.15
CLDN1-201ENST00000295522 ACIN1Q9UKV3 1341 aaKnown RBP15.94■□□□□ 0.14
CLDN1-201ENST00000295522 CENPBP07199 599 aaPredicted RBP15.88■□□□□ 0.13
CLDN1-201ENST00000295522 DCAF1Q9Y4B6 1507 aa15.87■□□□□ 0.13
CLDN1-201ENST00000295522 YTHDC1Q96MU7 727 aaKnown RBP15.81■□□□□ 0.12
CLDN1-201ENST00000295522 FAM9AQ8IZU1 332 aaPredicted RBP15.81■□□□□ 0.12
CLDN1-201ENST00000295522 CCER1Q8TC90 406 aaPredicted RBP15.72■□□□□ 0.11
CLDN1-201ENST00000295522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.71■□□□□ 0.11
CLDN1-201ENST00000295522 DIEXFQ68CQ4 756 aaKnown RBP15.69■□□□□ 0.1
CLDN1-201ENST00000295522 CCDC180Q9P1Z9 1646 aa15.65■□□□□ 0.1
CLDN1-201ENST00000295522 TTBK1Q5TCY1 1321 aaPredicted RBP15.63■□□□□ 0.09
CLDN1-201ENST00000295522 TRIM41Q8WV44 630 aa15.48■□□□□ 0.07
CLDN1-201ENST00000295522 ZCCHC6Q5VYS8 1495 aaKnown RBP15.35■□□□□ 0.05
CLDN1-201ENST00000295522 BCL11AQ9H165 835 aa15.34■□□□□ 0.05
CLDN1-201ENST00000295522 ABCC9O60706 1549 aa15.32■□□□□ 0.04
CLDN1-201ENST00000295522 MIER1Q8N108 512 aa15.23■□□□□ 0.03
CLDN1-201ENST00000295522 ZNF316A6NFI3 1004 aaPredicted RBP15.23■□□□□ 0.03
CLDN1-201ENST00000295522 ANP32EQ9BTT0 268 aa15.15■□□□□ 0.02
CLDN1-201ENST00000295522 BCANQ96GW7 911 aa15.09■□□□□ 0.01
CLDN1-201ENST00000295522 CSRNP3Q8WYN3 585 aa15.08■□□□□ 0.01
CLDN1-201ENST00000295522 SUPT16HQ9Y5B9 1047 aaKnown RBP15.02■□□□□ -0
CLDN1-201ENST00000295522 HNRNPUL2Q1KMD3 747 aaKnown RBP15.01□□□□□ -0.01
CLDN1-201ENST00000295522 TSHZ2Q9NRE2 1034 aa15□□□□□ -0.01
CLDN1-201ENST00000295522 ERICH6Q7L0X2 663 aa14.84□□□□□ -0.03
CLDN1-201ENST00000295522 UBTFP17480 764 aaKnown RBP14.81□□□□□ -0.04
CLDN1-201ENST00000295522 PRKCSHP14314 528 aaPredicted RBP14.79□□□□□ -0.04
CLDN1-201ENST00000295522 FKBP8Q14318 412 aa14.79□□□□□ -0.04
CLDN1-201ENST00000295522 RANGAP1P46060 587 aaPredicted RBP14.78□□□□□ -0.04
CLDN1-201ENST00000295522 ITGAEP38570 1179 aa14.77□□□□□ -0.05
CLDN1-201ENST00000295522 NEFLP07196 543 aa14.74□□□□□ -0.05
CLDN1-201ENST00000295522 CLSPNQ9HAW4 1339 aa14.72□□□□□ -0.05
CLDN1-201ENST00000295522 SCRIBQ14160 1630 aa14.72□□□□□ -0.05
CLDN1-201ENST00000295522 RSF1Q96T23 1441 aaPredicted RBP14.69□□□□□ -0.06
CLDN1-201ENST00000295522 RBM19Q9Y4C8 960 aaKnown RBP14.69□□□□□ -0.06
CLDN1-201ENST00000295522 APLP2Q06481 763 aa14.66□□□□□ -0.06
CLDN1-201ENST00000295522 KCNH8Q96L42 1107 aa14.65□□□□□ -0.06
CLDN1-201ENST00000295522 RB1CC1Q8TDY2 1594 aa14.63□□□□□ -0.07
CLDN1-201ENST00000295522 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
CLDN1-201ENST00000295522 NACADO15069 1562 aa14.6□□□□□ -0.07
CLDN1-201ENST00000295522 CEP162Q5TB80 1403 aa14.57□□□□□ -0.08
CLDN1-201ENST00000295522 TRIM52Q96A61 297 aa14.56□□□□□ -0.08
CLDN1-201ENST00000295522 IRX6P78412 446 aaPredicted RBP14.5□□□□□ -0.09
CLDN1-201ENST00000295522 MSH5O43196 834 aa14.49□□□□□ -0.09
CLDN1-201ENST00000295522 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
CLDN1-201ENST00000295522 NBR1Q14596 966 aa14.48□□□□□ -0.09
CLDN1-201ENST00000295522 DDX10Q13206 875 aaKnown RBP14.46□□□□□ -0.09
CLDN1-201ENST00000295522 DEKP35659 375 aaKnown RBP14.46□□□□□ -0.1
CLDN1-201ENST00000295522 ANO8Q9HCE9 1232 aaPredicted RBP14.46□□□□□ -0.1
CLDN1-201ENST00000295522 CDK11AQ9UQ88 783 aaPredicted RBP14.44□□□□□ -0.1
CLDN1-201ENST00000295522 HIRIP3Q9BW71 556 aaPredicted RBP14.4□□□□□ -0.1
CLDN1-201ENST00000295522 CCDC136Q96JN2 1154 aa14.39□□□□□ -0.11
CLDN1-201ENST00000295522 WRNQ14191 1432 aaPredicted RBP eCLIP14.39□□□□□ -0.11
CLDN1-201ENST00000295522 RTN4Q9NQC3 1192 aaKnown RBP14.38□□□□□ -0.11
CLDN1-201ENST00000295522 SOGA1O94964 1423 aa14.34□□□□□ -0.11
CLDN1-201ENST00000295522 MROH2BQ7Z745 1585 aa14.33□□□□□ -0.12
CLDN1-201ENST00000295522 TNIKQ9UKE5 1360 aa14.32□□□□□ -0.12
CLDN1-201ENST00000295522 UNC13AQ9UPW8 1703 aa14.3□□□□□ -0.12
CLDN1-201ENST00000295522 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.29□□□□□ -0.12
CLDN1-201ENST00000295522 CCDC88BA6NC98 1476 aa14.29□□□□□ -0.12
CLDN1-201ENST00000295522 SALL2Q9Y467 1007 aaPredicted RBP14.29□□□□□ -0.12
CLDN1-201ENST00000295522 RTL5Q5HYW3 569 aaPredicted RBP14.28□□□□□ -0.12
CLDN1-201ENST00000295522 ANP32CO43423 234 aa14.27□□□□□ -0.12
CLDN1-201ENST00000295522 ABCC8Q09428 1581 aa14.26□□□□□ -0.13
CLDN1-201ENST00000295522 HNRNPUQ00839 825 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLDN1-201ENST00000295522 WIZO95785 1651 aa14.24□□□□□ -0.13
CLDN1-201ENST00000295522 DHX57Q6P158 1386 aaKnown RBP14.23□□□□□ -0.13
CLDN1-201ENST00000295522 MYT1LQ9UL68 1186 aa14.22□□□□□ -0.13
CLDN1-201ENST00000295522 FANCIQ9NVI1 1328 aa14.22□□□□□ -0.13
CLDN1-201ENST00000295522 RUSC2Q8N2Y8 1516 aa14.21□□□□□ -0.14
CLDN1-201ENST00000295522 EIF5BO60841 1220 aaKnown RBP14.19□□□□□ -0.14
CLDN1-201ENST00000295522 CLIP1P30622 1438 aa14.19□□□□□ -0.14
CLDN1-201ENST00000295522 BICRAQ9NZM4 1560 aa14.18□□□□□ -0.14
CLDN1-201ENST00000295522 B4GALNT3Q6L9W6 998 aa14.17□□□□□ -0.14
CLDN1-201ENST00000295522 NOP58Q9Y2X3 529 aaKnown RBP14.16□□□□□ -0.14
CLDN1-201ENST00000295522 IL27Q8NEV9 243 aa14.15□□□□□ -0.14
CLDN1-201ENST00000295522 CNGB1Q14028 1251 aaPredicted RBP14.14□□□□□ -0.15
CLDN1-201ENST00000295522 GOLGA3Q08378 1498 aa14.14□□□□□ -0.15
CLDN1-201ENST00000295522 SIN3AQ96ST3 1273 aa14.14□□□□□ -0.15
CLDN1-201ENST00000295522 PAK3O75914 559 aaPredicted RBP14.12□□□□□ -0.15
CLDN1-201ENST00000295522 NPM2Q86SE8 214 aaKnown RBP14.1□□□□□ -0.15
CLDN1-201ENST00000295522 ANP32AP39687 249 aaKnown RBP14.07□□□□□ -0.16
CLDN1-201ENST00000295522 KANK4Q5T7N3 995 aaPredicted RBP14.07□□□□□ -0.16
CLDN1-201ENST00000295522 ZBTB47Q9UFB7 747 aaPredicted RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms