RNA–Protein interactions for RNA: ENST00000528253.3

PTP4A2-210, Transcript of protein tyrosine phosphatase type IVA, member 2, humanhuman

TSL 5

Gene PTP4A2, Length 806 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A2-210ENST00000528253 AEBP2Q6ZN18 517 aaPredicted RBP21.36■■□□□ 1.01
PTP4A2-210ENST00000528253 CHIC1Q5VXU3 224 aa19.88■□□□□ 0.77
PTP4A2-210ENST00000528253 SENP3Q9H4L4 574 aaPredicted RBP18.33■□□□□ 0.52
PTP4A2-210ENST00000528253 PHF23Q9BUL5 403 aaPredicted RBP17.96■□□□□ 0.47
PTP4A2-210ENST00000528253 POTEDQ86YR6 584 aa17.89■□□□□ 0.45
PTP4A2-210ENST00000528253 NISCHQ9Y2I1 1504 aa17.37■□□□□ 0.37
PTP4A2-210ENST00000528253 FOXD1Q16676 465 aa17.24■□□□□ 0.35
PTP4A2-210ENST00000528253 MSH5O43196 834 aa16.48■□□□□ 0.23
PTP4A2-210ENST00000528253 PIAS4Q8N2W9 510 aaPredicted RBP15.89■□□□□ 0.13
PTP4A2-210ENST00000528253 PLPPR3Q6T4P5 718 aa15.85■□□□□ 0.13
PTP4A2-210ENST00000528253 CCDC180Q9P1Z9 1646 aa15.5■□□□□ 0.07
PTP4A2-210ENST00000528253 PPP6R1Q9UPN7 881 aa15.35■□□□□ 0.05
PTP4A2-210ENST00000528253 ADRA2BP18089 450 aa15.26■□□□□ 0.03
PTP4A2-210ENST00000528253 ABCC9O60706 1549 aa15.2■□□□□ 0.02
PTP4A2-210ENST00000528253 CACNB1Q02641 598 aaPredicted RBP14.83□□□□□ -0.04
PTP4A2-210ENST00000528253 DCAF8L2P0C7V8 631 aa14.63□□□□□ -0.07
PTP4A2-210ENST00000528253 RB1CC1Q8TDY2 1594 aa14.62□□□□□ -0.07
PTP4A2-210ENST00000528253 NACADO15069 1562 aa14.58□□□□□ -0.08
PTP4A2-210ENST00000528253 MYO15BQ96JP2 1530 aa14.44□□□□□ -0.1
PTP4A2-210ENST00000528253 ZCCHC6Q5VYS8 1495 aaKnown RBP14.42□□□□□ -0.1
PTP4A2-210ENST00000528253 DMRT2Q9Y5R5 561 aa14.38□□□□□ -0.11
PTP4A2-210ENST00000528253 DCAF1Q9Y4B6 1507 aa14.36□□□□□ -0.11
PTP4A2-210ENST00000528253 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
PTP4A2-210ENST00000528253 MAPK8IP2Q13387 824 aaPredicted RBP14.33□□□□□ -0.12
PTP4A2-210ENST00000528253 PABPN1Q86U42 306 aaKnown RBP eCLIP14.21□□□□□ -0.13
PTP4A2-210ENST00000528253 BICRAQ9NZM4 1560 aa14.13□□□□□ -0.15
PTP4A2-210ENST00000528253 SCRIBQ14160 1630 aa14.12□□□□□ -0.15
PTP4A2-210ENST00000528253 KCNA4P22459 653 aa14.09□□□□□ -0.15
PTP4A2-210ENST00000528253 RNF39Q9H2S5 420 aa13.99□□□□□ -0.17
PTP4A2-210ENST00000528253 DNAJC5BQ9UF47 199 aa13.99□□□□□ -0.17
PTP4A2-210ENST00000528253 SHROOM4Q9ULL8 1493 aa13.99□□□□□ -0.17
PTP4A2-210ENST00000528253 PPP4R3CPQ6ZMV5 832 aa13.97□□□□□ -0.17
PTP4A2-210ENST00000528253 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
PTP4A2-210ENST00000528253 SCAF1Q9H7N4 1312 aaKnown RBP13.87□□□□□ -0.19
PTP4A2-210ENST00000528253 NCBP3Q53F19 620 aaKnown RBP13.82□□□□□ -0.2
PTP4A2-210ENST00000528253 POTEHQ6S545 545 aa13.81□□□□□ -0.2
PTP4A2-210ENST00000528253 EIF4G1Q04637 1599 aaKnown RBP13.79□□□□□ -0.2
PTP4A2-210ENST00000528253 CC2D2AQ9P2K1 1620 aa13.76□□□□□ -0.21
PTP4A2-210ENST00000528253 C1QBPQ07021 282 aaKnown RBP13.69□□□□□ -0.22
PTP4A2-210ENST00000528253 CECR2Q9BXF3 1484 aa13.67□□□□□ -0.22
PTP4A2-210ENST00000528253 EHMT2Q96KQ7 1210 aa13.6□□□□□ -0.23
PTP4A2-210ENST00000528253 SLC4A1APQ9BWU0 796 aaKnown RBP13.55□□□□□ -0.24
PTP4A2-210ENST00000528253 CNKSR2Q8WXI2 1034 aa13.53□□□□□ -0.24
PTP4A2-210ENST00000528253 NPM3O75607 178 aaKnown RBP13.51□□□□□ -0.25
PTP4A2-210ENST00000528253 SMARCA4P51532 1647 aa13.5□□□□□ -0.25
PTP4A2-210ENST00000528253 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
PTP4A2-210ENST00000528253 NCAPD3P42695 1498 aa13.43□□□□□ -0.26
PTP4A2-210ENST00000528253 SMARCA2P51531 1590 aa13.43□□□□□ -0.26
PTP4A2-210ENST00000528253 ATAD2BQ9ULI0 1458 aa13.42□□□□□ -0.26
PTP4A2-210ENST00000528253 HOXD11P31277 338 aaPredicted RBP13.42□□□□□ -0.26
PTP4A2-210ENST00000528253 MROH2BQ7Z745 1585 aa13.37□□□□□ -0.27
PTP4A2-210ENST00000528253 HMGXB3Q12766 1538 aa13.35□□□□□ -0.27
PTP4A2-210ENST00000528253 PEG3Q9GZU2 1588 aa13.35□□□□□ -0.27
PTP4A2-210ENST00000528253 BAZ1BQ9UIG0 1483 aaKnown RBP13.33□□□□□ -0.28
PTP4A2-210ENST00000528253 WIZO95785 1651 aa13.27□□□□□ -0.29
PTP4A2-210ENST00000528253 CSRNP3Q8WYN3 585 aa13.22□□□□□ -0.29
PTP4A2-210ENST00000528253 RSF1Q96T23 1441 aaPredicted RBP13.2□□□□□ -0.3
PTP4A2-210ENST00000528253 RNF216Q9NWF9 866 aaPredicted RBP13.16□□□□□ -0.3
PTP4A2-210ENST00000528253 ERCC6Q03468 1493 aa13.13□□□□□ -0.31
PTP4A2-210ENST00000528253 NESP48681 1621 aa13.13□□□□□ -0.31
PTP4A2-210ENST00000528253 LAMC3Q9Y6N6 1575 aa13.11□□□□□ -0.31
PTP4A2-210ENST00000528253 TOP2AP11388 1531 aaKnown RBP13.08□□□□□ -0.31
PTP4A2-210ENST00000528253 CADPSQ9ULU8 1353 aa13.05□□□□□ -0.32
PTP4A2-210ENST00000528253 PDS5BQ9NTI5 1447 aa13.04□□□□□ -0.32
PTP4A2-210ENST00000528253 KIF21AQ7Z4S6 1674 aa13.02□□□□□ -0.33
PTP4A2-210ENST00000528253 CUX2O14529 1486 aa12.99□□□□□ -0.33
PTP4A2-210ENST00000528253 CCDC88BA6NC98 1476 aa12.94□□□□□ -0.34
PTP4A2-210ENST00000528253 CFTRP13569 1480 aa12.94□□□□□ -0.34
PTP4A2-210ENST00000528253 THOC2Q8NI27 1593 aaKnown RBP12.94□□□□□ -0.34
PTP4A2-210ENST00000528253 ZBTB22O15209 634 aa12.93□□□□□ -0.34
PTP4A2-210ENST00000528253 PRDM2Q13029 1718 aa12.93□□□□□ -0.34
PTP4A2-210ENST00000528253 FOXD4L1Q9NU39 408 aa12.91□□□□□ -0.34
PTP4A2-210ENST00000528253 FANCD2Q9BXW9 1451 aa12.9□□□□□ -0.34
PTP4A2-210ENST00000528253 CEP164Q9UPV0 1460 aa12.89□□□□□ -0.35
PTP4A2-210ENST00000528253 SUPT5HO00267 1087 aaKnown RBP12.88□□□□□ -0.35
PTP4A2-210ENST00000528253 MRC2Q9UBG0 1479 aa12.87□□□□□ -0.35
PTP4A2-210ENST00000528253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.85□□□□□ -0.35
PTP4A2-210ENST00000528253 WDR62O43379 1518 aa12.83□□□□□ -0.36
PTP4A2-210ENST00000528253 DSG3P32926 999 aa12.77□□□□□ -0.37
PTP4A2-210ENST00000528253 URB2Q14146 1524 aaKnown RBP12.75□□□□□ -0.37
PTP4A2-210ENST00000528253 ABCC8Q09428 1581 aa12.72□□□□□ -0.37
PTP4A2-210ENST00000528253 DNAJC5Q9H3Z4 198 aa12.69□□□□□ -0.38
PTP4A2-210ENST00000528253 TOPBP1Q92547 1522 aa12.67□□□□□ -0.38
PTP4A2-210ENST00000528253 DNMBPQ6XZF7 1577 aa12.66□□□□□ -0.38
PTP4A2-210ENST00000528253 CAPN15O75808 1086 aa12.64□□□□□ -0.39
PTP4A2-210ENST00000528253 IFT140Q96RY7 1462 aa12.62□□□□□ -0.39
PTP4A2-210ENST00000528253 SLC4A2P04920 1241 aa12.62□□□□□ -0.39
PTP4A2-210ENST00000528253 SPINK5Q9NQ38 1064 aaPredicted RBP12.62□□□□□ -0.39
PTP4A2-210ENST00000528253 POLA1P09884 1462 aaPredicted RBP12.55□□□□□ -0.4
PTP4A2-210ENST00000528253 CUX1P39880 1505 aa12.55□□□□□ -0.4
PTP4A2-210ENST00000528253 TARBP1Q13395 1621 aaKnown RBP12.55□□□□□ -0.4
PTP4A2-210ENST00000528253 ZNF608Q9ULD9 1512 aaPredicted RBP12.54□□□□□ -0.4
PTP4A2-210ENST00000528253 MYCNP04198 464 aaPredicted RBP12.54□□□□□ -0.4
PTP4A2-210ENST00000528253 SOGA1O94964 1423 aa12.54□□□□□ -0.4
PTP4A2-210ENST00000528253 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
PTP4A2-210ENST00000528253 RAD54L2Q9Y4B4 1467 aa12.51□□□□□ -0.41
PTP4A2-210ENST00000528253 EIF4G3O43432 1585 aaKnown RBP12.51□□□□□ -0.41
PTP4A2-210ENST00000528253 OSCARQ8IYS5 282 aa12.5□□□□□ -0.41
PTP4A2-210ENST00000528253 AQRO60306 1485 aaKnown RBP eCLIP12.49□□□□□ -0.416e-8■■■■□ 23.2
PTP4A2-210ENST00000528253 WRNQ14191 1432 aaPredicted RBP eCLIP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms