Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC009949.1-201ENST00000623048 1830 ntBASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 AC010460.3-201ENST00000511359 1579 ntBASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 INTS4P1-201ENST00000438455 1935 ntBASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AC067852.2-201ENST00000590513 2313 ntBASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 NUS1P2-201ENST00000417358 873 ntBASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AC103564.2-201ENST00000432853 1299 ntBASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 KRT18P31-201ENST00000506277 1292 ntBASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AL591684.3-201ENST00000605187 298 ntBASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 AC012313.10-201ENST00000623509 926 ntBASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
NUP54Q7Z3B4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 PCDHB18P-201ENST00000524813 2368 ntBASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 DUSP5P1-201ENST00000441325 1139 ntBASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 LINC00896-202ENST00000609602 2128 ntBASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NUP54Q7Z3B4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NUP54Q7Z3B4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
NUP54Q7Z3B4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
NUP54Q7Z3B4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.27■□□□□ 0.2
NUP54Q7Z3B4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NUP54Q7Z3B4 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
NUP54Q7Z3B4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms