Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RUNDC3AQ59EK9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RUNDC3AQ59EK9 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 AC105020.1-201ENST00000435356 2205 ntBASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 LINC01568-207ENST00000641790 1380 ntBASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms