Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
CDX1P47902 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 SPDYE15P-201ENST00000424157 909 ntBASIC14.41□□□□□ -0.1
CDX1P47902 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.41□□□□□ -0.1
CDX1P47902 FAM86EP-206ENST00000510506 987 ntBASIC14.41□□□□□ -0.1
CDX1P47902 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.41□□□□□ -0.1
CDX1P47902 AL136038.3-201ENST00000561909 1096 ntBASIC14.41□□□□□ -0.1
CDX1P47902 MIR3917-201ENST00000580971 93 ntBASIC14.41□□□□□ -0.1
CDX1P47902 MIR3180-4-201ENST00000582223 153 ntBASIC14.41□□□□□ -0.1
CDX1P47902 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 AL358472.4-201ENST00000633140 710 ntBASIC14.41□□□□□ -0.1
CDX1P47902 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.41□□□□□ -0.1
CDX1P47902 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 AC005052.1-201ENST00000625181 2492 ntBASIC14.41□□□□□ -0.1
CDX1P47902 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CDX1P47902 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CDX1P47902 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.41□□□□□ -0.1
CDX1P47902 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CDX1P47902 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
CDX1P47902 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC14.4□□□□□ -0.1
CDX1P47902 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CDX1P47902 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC14.4□□□□□ -0.1
CDX1P47902 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.4□□□□□ -0.1
CDX1P47902 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC14.4□□□□□ -0.1
CDX1P47902 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.4□□□□□ -0.1
CDX1P47902 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC14.4□□□□□ -0.1
CDX1P47902 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
CDX1P47902 HYMAI.1-201ENST00000620949 238 ntBASIC14.4□□□□□ -0.1
CDX1P47902 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.4□□□□□ -0.1
CDX1P47902 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.4□□□□□ -0.1
CDX1P47902 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.4□□□□□ -0.1
CDX1P47902 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.4□□□□□ -0.1
CDX1P47902 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CDX1P47902 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDX1P47902 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CDX1P47902 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.39□□□□□ -0.11
CDX1P47902 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CDX1P47902 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.39□□□□□ -0.11
CDX1P47902 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.39□□□□□ -0.11
CDX1P47902 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.39□□□□□ -0.11
CDX1P47902 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDX1P47902 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms