Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
MSX2P35548 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.82■□□□□ 0.28
MSX2P35548 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
MSX2P35548 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX2P35548 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
MSX2P35548 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
MSX2P35548 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
MSX2P35548 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 LYSMD4-203ENST00000378904 2122 ntBASIC16.81■□□□□ 0.28
MSX2P35548 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.81■□□□□ 0.28
MSX2P35548 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX2P35548 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
MSX2P35548 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.81■□□□□ 0.28
MSX2P35548 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.81■□□□□ 0.28
MSX2P35548 AP003041.3-201ENST00000527151 707 ntBASIC16.81■□□□□ 0.28
MSX2P35548 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.81■□□□□ 0.28
MSX2P35548 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX2P35548 CD177P1-201ENST00000606252 935 ntBASIC16.81■□□□□ 0.28
MSX2P35548 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.81■□□□□ 0.28
MSX2P35548 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
MSX2P35548 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.81■□□□□ 0.28
MSX2P35548 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX2P35548 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX2P35548 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX2P35548 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
MSX2P35548 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
MSX2P35548 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX2P35548 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX2P35548 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX2P35548 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX2P35548 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 AC046185.3-201ENST00000623228 1824 ntBASIC16.8■□□□□ 0.28
MSX2P35548 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
MSX2P35548 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX2P35548 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.8■□□□□ 0.28
MSX2P35548 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
MSX2P35548 ID1-201ENST00000376105 1233 ntBASIC16.8■□□□□ 0.28
MSX2P35548 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX2P35548 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX2P35548 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.8■□□□□ 0.28
MSX2P35548 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX2P35548 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
MSX2P35548 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.8■□□□□ 0.28
MSX2P35548 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.8■□□□□ 0.28
MSX2P35548 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.8■□□□□ 0.28
MSX2P35548 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
MSX2P35548 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.8■□□□□ 0.28
MSX2P35548 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
MSX2P35548 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX2P35548 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX2P35548 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
MSX2P35548 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
MSX2P35548 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.79■□□□□ 0.28
MSX2P35548 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.79■□□□□ 0.28
MSX2P35548 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms