Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.63□□□□□ -0.23
HOXD3P31249 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.63□□□□□ -0.23
HOXD3P31249 AC139887.3-201ENST00000568585 713 ntBASIC13.63□□□□□ -0.23
HOXD3P31249 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.63□□□□□ -0.23
HOXD3P31249 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
HOXD3P31249 AL355877.3-201ENST00000622820 899 ntBASIC13.63□□□□□ -0.23
HOXD3P31249 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXD3P31249 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXD3P31249 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
HOXD3P31249 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 AC009949.1-201ENST00000623048 1830 ntBASIC13.62□□□□□ -0.23
HOXD3P31249 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
HOXD3P31249 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD3P31249 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD3P31249 AC018712.1-201ENST00000455767 687 ntBASIC13.62□□□□□ -0.23
HOXD3P31249 FGFR3P6-201ENST00000457012 610 ntBASIC13.62□□□□□ -0.23
HOXD3P31249 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.62□□□□□ -0.23
HOXD3P31249 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 AC106730.1-201ENST00000566722 1090 ntBASIC13.62□□□□□ -0.23
HOXD3P31249 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD3P31249 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC13.62□□□□□ -0.23
HOXD3P31249 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 AP001269.4-201ENST00000609611 512 ntBASIC13.62□□□□□ -0.23
HOXD3P31249 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 FAM215A-202ENST00000632077 792 ntBASIC13.62□□□□□ -0.23
HOXD3P31249 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
HOXD3P31249 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXD3P31249 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 AC010460.3-201ENST00000511359 1579 ntBASIC13.62□□□□□ -0.23
HOXD3P31249 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD3P31249 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 INTS4P1-201ENST00000438455 1935 ntBASIC13.61□□□□□ -0.23
HOXD3P31249 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms