Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH3P20585 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH3P20585 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.53■□□□□ 0.4
MSH3P20585 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 FAM220CP-201ENST00000395253 831 ntBASIC17.53■□□□□ 0.4
MSH3P20585 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.53■□□□□ 0.4
MSH3P20585 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.53■□□□□ 0.4
MSH3P20585 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.53■□□□□ 0.4
MSH3P20585 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH3P20585 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH3P20585 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 CLEC4GP1-201ENST00000596555 870 ntBASIC17.53■□□□□ 0.4
MSH3P20585 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.53■□□□□ 0.4
MSH3P20585 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.53■□□□□ 0.4
MSH3P20585 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH3P20585 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.53■□□□□ 0.4
MSH3P20585 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.52■□□□□ 0.4
MSH3P20585 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH3P20585 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
MSH3P20585 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.52■□□□□ 0.4
MSH3P20585 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH3P20585 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH3P20585 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
MSH3P20585 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH3P20585 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH3P20585 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH3P20585 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH3P20585 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH3P20585 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.52■□□□□ 0.4
MSH3P20585 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
MSH3P20585 COX5BP2-201ENST00000392354 334 ntBASIC17.52■□□□□ 0.4
MSH3P20585 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.52■□□□□ 0.4
MSH3P20585 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.52■□□□□ 0.4
MSH3P20585 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.52■□□□□ 0.4
MSH3P20585 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.52■□□□□ 0.4
MSH3P20585 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
MSH3P20585 AC011467.2-201ENST00000598425 242 ntBASIC17.52■□□□□ 0.4
MSH3P20585 AL121772.3-201ENST00000610840 674 ntBASIC17.52■□□□□ 0.4
MSH3P20585 AC114341.1-201ENST00000618070 349 ntBASIC17.52■□□□□ 0.4
MSH3P20585 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH3P20585 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
MSH3P20585 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
MSH3P20585 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.52■□□□□ 0.39
MSH3P20585 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSH3P20585 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.52■□□□□ 0.39
MSH3P20585 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.52■□□□□ 0.39
MSH3P20585 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
MSH3P20585 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
MSH3P20585 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
MSH3P20585 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH3P20585 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH3P20585 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
MSH3P20585 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH3P20585 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH3P20585 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.51■□□□□ 0.39
MSH3P20585 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH3P20585 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
MSH3P20585 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH3P20585 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH3P20585 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH3P20585 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH3P20585 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH3P20585 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
MSH3P20585 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH3P20585 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MSH3P20585 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
MSH3P20585 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
MSH3P20585 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
MSH3P20585 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.5■□□□□ 0.39
MSH3P20585 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.5■□□□□ 0.39
MSH3P20585 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.5■□□□□ 0.39
MSH3P20585 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.5■□□□□ 0.39
MSH3P20585 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms