Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
HOXC4P09017 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HOXC4P09017 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC4P09017 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC4P09017 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC4P09017 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC4P09017 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC4P09017 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
HOXC4P09017 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC4P09017 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC4P09017 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC4P09017 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC4P09017 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC4P09017 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
HOXC4P09017 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HOXC4P09017 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HOXC4P09017 MIR940-201ENST00000401276 94 ntBASIC17.08■□□□□ 0.32
HOXC4P09017 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.08■□□□□ 0.32
HOXC4P09017 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
HOXC4P09017 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.08■□□□□ 0.32
HOXC4P09017 RNA5SP416-201ENST00000516838 111 ntBASIC17.08■□□□□ 0.32
HOXC4P09017 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.08■□□□□ 0.32
HOXC4P09017 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXC4P09017 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC4P09017 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HOXC4P09017 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.08■□□□□ 0.32
HOXC4P09017 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXC4P09017 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HOXC4P09017 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC4P09017 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC4P09017 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC4P09017 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
HOXC4P09017 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
HOXC4P09017 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC4P09017 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.07■□□□□ 0.32
HOXC4P09017 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HOXC4P09017 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC4P09017 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
HOXC4P09017 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC4P09017 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC4P09017 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HOXC4P09017 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HOXC4P09017 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC4P09017 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 VN2R19P-201ENST00000442399 1052 ntBASIC17.07■□□□□ 0.32
HOXC4P09017 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 AC108073.2-201ENST00000464002 357 ntBASIC17.07■□□□□ 0.32
HOXC4P09017 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.07■□□□□ 0.32
HOXC4P09017 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.07■□□□□ 0.32
HOXC4P09017 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC4P09017 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.07■□□□□ 0.32
HOXC4P09017 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC4P09017 AC026471.1-201ENST00000564629 3026 ntBASIC17.07■□□□□ 0.32
HOXC4P09017 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HOXC4P09017 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXC4P09017 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HOXC4P09017 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.06■□□□□ 0.32
HOXC4P09017 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HOXC4P09017 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXC4P09017 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
HOXC4P09017 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 CRYGEP-201ENST00000412192 528 ntBASIC17.06■□□□□ 0.32
HOXC4P09017 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.06■□□□□ 0.32
HOXC4P09017 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.06■□□□□ 0.32
HOXC4P09017 AC040169.1-201ENST00000565382 521 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms