Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRPF40AO75400 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.49■□□□□ 0.87
PRPF40AO75400 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.49■□□□□ 0.87
PRPF40AO75400 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRPF40AO75400 AC116562.4-202ENST00000641738 218 ntBASIC20.49■□□□□ 0.87
PRPF40AO75400 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.49■□□□□ 0.87
PRPF40AO75400 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRPF40AO75400 AC079328.2-201ENST00000561241 3354 ntBASIC20.49■□□□□ 0.87
PRPF40AO75400 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRPF40AO75400 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRPF40AO75400 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRPF40AO75400 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRPF40AO75400 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
PRPF40AO75400 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
PRPF40AO75400 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.48■□□□□ 0.87
PRPF40AO75400 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
PRPF40AO75400 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 FAM210CP-201ENST00000445714 574 ntBASIC20.48■□□□□ 0.87
PRPF40AO75400 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PRPF40AO75400 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.48■□□□□ 0.87
PRPF40AO75400 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.48■□□□□ 0.87
PRPF40AO75400 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
PRPF40AO75400 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC20.48■□□□□ 0.87
PRPF40AO75400 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.48■□□□□ 0.87
PRPF40AO75400 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.48■□□□□ 0.87
PRPF40AO75400 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 DOC2GP-204ENST00000639052 2548 ntBASIC20.48■□□□□ 0.87
PRPF40AO75400 AC005915.1-201ENST00000624912 2018 ntBASIC20.48■□□□□ 0.87
PRPF40AO75400 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRPF40AO75400 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
PRPF40AO75400 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 LINC01568-207ENST00000641790 1380 ntBASIC20.47■□□□□ 0.87
PRPF40AO75400 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.47■□□□□ 0.87
PRPF40AO75400 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PRPF40AO75400 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.47■□□□□ 0.87
PRPF40AO75400 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.47■□□□□ 0.87
PRPF40AO75400 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PRPF40AO75400 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.47■□□□□ 0.87
PRPF40AO75400 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
PRPF40AO75400 OR6D1P-203ENST00000641209 4860 ntBASIC20.47■□□□□ 0.87
PRPF40AO75400 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.47■□□□□ 0.87
PRPF40AO75400 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.47■□□□□ 0.87
PRPF40AO75400 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PRPF40AO75400 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.47■□□□□ 0.87
PRPF40AO75400 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.47■□□□□ 0.87
PRPF40AO75400 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 AC128688.1-201ENST00000487626 519 ntBASIC20.47■□□□□ 0.87
PRPF40AO75400 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.47■□□□□ 0.87
PRPF40AO75400 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.47■□□□□ 0.87
PRPF40AO75400 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.47■□□□□ 0.87
PRPF40AO75400 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
PRPF40AO75400 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.47■□□□□ 0.87
PRPF40AO75400 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRPF40AO75400 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.46■□□□□ 0.87
PRPF40AO75400 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 CROCCP1-201ENST00000426910 5675 ntBASIC20.46■□□□□ 0.87
PRPF40AO75400 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.46■□□□□ 0.87
PRPF40AO75400 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.46■□□□□ 0.87
PRPF40AO75400 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 AC145285.6-201ENST00000604632 637 ntBASIC20.46■□□□□ 0.87
PRPF40AO75400 AC010947.1-201ENST00000623454 693 ntBASIC20.46■□□□□ 0.87
PRPF40AO75400 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.46■□□□□ 0.87
PRPF40AO75400 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.46■□□□□ 0.87
PRPF40AO75400 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
PRPF40AO75400 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
PRPF40AO75400 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
PRPF40AO75400 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.46■□□□□ 0.87
PRPF40AO75400 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PRPF40AO75400 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms