Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 KRT8P9-201ENST00000558927 1449 ntBASIC17.35■□□□□ 0.37
SNX3O60493 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
SNX3O60493 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.35■□□□□ 0.37
SNX3O60493 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SNX3O60493 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.34■□□□□ 0.37
SNX3O60493 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SNX3O60493 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SNX3O60493 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.34■□□□□ 0.37
SNX3O60493 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SNX3O60493 AL162430.1-201ENST00000480705 870 ntBASIC17.34■□□□□ 0.37
SNX3O60493 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SNX3O60493 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.34■□□□□ 0.37
SNX3O60493 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.34■□□□□ 0.37
SNX3O60493 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SNX3O60493 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
SNX3O60493 AC096733.2-201ENST00000609937 1394 ntBASIC17.34■□□□□ 0.37
SNX3O60493 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 MIR6786-201ENST00000616843 113 ntBASIC17.34■□□□□ 0.37
SNX3O60493 AC005052.1-201ENST00000625181 2492 ntBASIC17.34■□□□□ 0.37
SNX3O60493 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SNX3O60493 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SNX3O60493 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.34■□□□□ 0.37
SNX3O60493 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SNX3O60493 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SNX3O60493 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SNX3O60493 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.33■□□□□ 0.37
SNX3O60493 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.33■□□□□ 0.37
SNX3O60493 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SNX3O60493 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.33■□□□□ 0.36
SNX3O60493 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.33■□□□□ 0.36
SNX3O60493 AC005104.2-201ENST00000427818 678 ntBASIC17.33■□□□□ 0.36
SNX3O60493 AC006970.2-201ENST00000450065 779 ntBASIC17.33■□□□□ 0.36
SNX3O60493 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.33■□□□□ 0.36
SNX3O60493 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.33■□□□□ 0.36
SNX3O60493 AC104390.1-201ENST00000555663 520 ntBASIC17.33■□□□□ 0.36
SNX3O60493 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SNX3O60493 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SNX3O60493 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 CROCCP1-201ENST00000426910 5675 ntBASIC17.33■□□□□ 0.36
SNX3O60493 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SNX3O60493 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.33■□□□□ 0.36
SNX3O60493 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX3O60493 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SNX3O60493 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.32■□□□□ 0.36
SNX3O60493 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.32■□□□□ 0.36
SNX3O60493 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SNX3O60493 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.32■□□□□ 0.36
SNX3O60493 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
SNX3O60493 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX3O60493 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.32■□□□□ 0.36
SNX3O60493 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.32■□□□□ 0.36
SNX3O60493 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms