Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 REXO1L11P-201ENST00000620964 1927 ntBASIC12.9□□□□□ -0.34
SMKR1H3BMG3 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 PCDHB17P-201ENST00000539533 2393 ntBASIC12.9□□□□□ -0.34
SMKR1H3BMG3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 KRT17P3-201ENST00000420566 1262 ntBASIC12.9□□□□□ -0.34
SMKR1H3BMG3 KRT18P23-201ENST00000435622 1283 ntBASIC12.9□□□□□ -0.34
SMKR1H3BMG3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 MIR5787-201ENST00000611784 55 ntBASIC12.9□□□□□ -0.34
SMKR1H3BMG3 CR392000.1-201ENST00000624770 1228 ntBASIC12.9□□□□□ -0.34
SMKR1H3BMG3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 AC063926.3-201ENST00000624734 5658 ntBASIC12.9□□□□□ -0.34
SMKR1H3BMG3 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.9□□□□□ -0.34
SMKR1H3BMG3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC12.9□□□□□ -0.35
SMKR1H3BMG3 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 KRT16P1-201ENST00000399124 1418 ntBASIC12.89□□□□□ -0.35
SMKR1H3BMG3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 ASL-204ENST00000395331 1538 ntTSL 5 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 KSR1P1-201ENST00000446298 240 ntBASIC12.89□□□□□ -0.35
SMKR1H3BMG3 AC011506.1-201ENST00000474329 610 ntBASIC12.89□□□□□ -0.35
SMKR1H3BMG3 LY6E-205ENST00000519611 635 ntTSL 3 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 AL137784.2-201ENST00000607332 1000 ntBASIC12.89□□□□□ -0.35
SMKR1H3BMG3 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SMKR1H3BMG3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms