Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 FAM210CP-201ENST00000445714 574 ntBASIC15.4■□□□□ 0.06
NKX3-1Q99801 ECEL1P2-202ENST00000465689 757 ntBASIC15.4■□□□□ 0.06
NKX3-1Q99801 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 C2orf69P3-201ENST00000565542 1120 ntBASIC15.4■□□□□ 0.06
NKX3-1Q99801 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 AL157888.1-201ENST00000631930 593 ntBASIC15.4■□□□□ 0.06
NKX3-1Q99801 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 AL138688.1-201ENST00000624851 1594 ntBASIC15.4■□□□□ 0.06
NKX3-1Q99801 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.39■□□□□ 0.05
NKX3-1Q99801 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 AC005363.2-201ENST00000618631 242 ntBASIC15.39■□□□□ 0.05
NKX3-1Q99801 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 AC008741.2-201ENST00000612792 3115 ntBASIC15.39■□□□□ 0.05
NKX3-1Q99801 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.39■□□□□ 0.05
NKX3-1Q99801 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NKX3-1Q99801 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 NFIC-211ENST00000641145 8399 ntBASIC15.38■□□□□ 0.05
NKX3-1Q99801 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 TSPY14P-201ENST00000303979 915 ntBASIC15.38■□□□□ 0.05
NKX3-1Q99801 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 MIR3180-4-201ENST00000582223 153 ntBASIC15.38■□□□□ 0.05
NKX3-1Q99801 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms