Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.04
USP48Q86UV5 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.04
USP48Q86UV5 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.57■■□□□ 1.04
USP48Q86UV5 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC21.57■■□□□ 1.04
USP48Q86UV5 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.57■■□□□ 1.04
USP48Q86UV5 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
USP48Q86UV5 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.57■■□□□ 1.04
USP48Q86UV5 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.57■■□□□ 1.04
USP48Q86UV5 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC21.57■■□□□ 1.04
USP48Q86UV5 MTDHP5-201ENST00000598980 586 ntBASIC21.57■■□□□ 1.04
USP48Q86UV5 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.57■■□□□ 1.04
USP48Q86UV5 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.57■■□□□ 1.04
USP48Q86UV5 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP48Q86UV5 AC099343.3-201ENST00000605834 2503 ntBASIC21.57■■□□□ 1.04
USP48Q86UV5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.57■■□□□ 1.04
USP48Q86UV5 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.56■■□□□ 1.04
USP48Q86UV5 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
USP48Q86UV5 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
USP48Q86UV5 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 METTL21AP1-201ENST00000438852 635 ntBASIC21.56■■□□□ 1.04
USP48Q86UV5 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC21.56■■□□□ 1.04
USP48Q86UV5 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC21.56■■□□□ 1.04
USP48Q86UV5 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
USP48Q86UV5 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC21.56■■□□□ 1.04
USP48Q86UV5 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC21.56■■□□□ 1.04
USP48Q86UV5 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC21.56■■□□□ 1.04
USP48Q86UV5 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 AC107918.4-202ENST00000641623 219 ntBASIC21.56■■□□□ 1.04
USP48Q86UV5 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
USP48Q86UV5 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP48Q86UV5 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.55■■□□□ 1.04
USP48Q86UV5 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.55■■□□□ 1.04
USP48Q86UV5 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC21.55■■□□□ 1.04
USP48Q86UV5 AC009947.1-201ENST00000444350 727 ntBASIC21.55■■□□□ 1.04
USP48Q86UV5 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC21.55■■□□□ 1.04
USP48Q86UV5 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
USP48Q86UV5 AL139288.1-201ENST00000623748 933 ntBASIC21.55■■□□□ 1.04
USP48Q86UV5 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
USP48Q86UV5 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.55■■□□□ 1.04
USP48Q86UV5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.55■■□□□ 1.04
USP48Q86UV5 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.55■■□□□ 1.04
USP48Q86UV5 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP48Q86UV5 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
USP48Q86UV5 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
USP48Q86UV5 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 AC134043.2-201ENST00000624206 2238 ntBASIC21.54■■□□□ 1.04
USP48Q86UV5 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 CRCP-205ENST00000431089 942 ntTSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.54■■□□□ 1.04
USP48Q86UV5 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC21.54■■□□□ 1.04
USP48Q86UV5 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC21.54■■□□□ 1.04
USP48Q86UV5 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC21.54■■□□□ 1.04
USP48Q86UV5 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 AC008687.5-201ENST00000593746 558 ntBASIC21.54■■□□□ 1.04
USP48Q86UV5 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms