Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN6P29350 LYSMD4-203ENST00000378904 2122 ntBASIC16.72■□□□□ 0.27
PTPN6P29350 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN6P29350 MIR662-201ENST00000384847 95 ntBASIC16.72■□□□□ 0.27
PTPN6P29350 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN6P29350 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.72■□□□□ 0.27
PTPN6P29350 AC112698.1-201ENST00000510299 916 ntBASIC16.72■□□□□ 0.27
PTPN6P29350 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN6P29350 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN6P29350 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN6P29350 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN6P29350 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN6P29350 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.72■□□□□ 0.27
PTPN6P29350 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTPN6P29350 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN6P29350 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN6P29350 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN6P29350 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN6P29350 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN6P29350 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN6P29350 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PTPN6P29350 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN6P29350 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN6P29350 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN6P29350 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
PTPN6P29350 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PTPN6P29350 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.7■□□□□ 0.26
PTPN6P29350 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.7■□□□□ 0.26
PTPN6P29350 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.7■□□□□ 0.26
PTPN6P29350 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN6P29350 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN6P29350 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN6P29350 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN6P29350 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN6P29350 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN6P29350 UPK3BP1-201ENST00000428678 509 ntBASIC16.69■□□□□ 0.26
PTPN6P29350 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN6P29350 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.69■□□□□ 0.26
PTPN6P29350 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN6P29350 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN6P29350 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN6P29350 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms