Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 HLA-A-209ENST00000638375 975 ntBASIC13.28□□□□□ -0.28
HLA-DQA1P01909 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
HLA-DQA1P01909 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HLA-DQA1P01909 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 TREX2-204ENST00000370212 861 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 GATS-209ENST00000454084 1030 ntTSL 3 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 PRSS44-201ENST00000515154 1146 ntBASIC13.27□□□□□ -0.29
HLA-DQA1P01909 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 REXO2-208ENST00000539754 791 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 AC006557.6-201ENST00000623071 864 ntBASIC13.27□□□□□ -0.29
HLA-DQA1P01909 LINC01451-201ENST00000623792 534 ntBASIC13.27□□□□□ -0.29
HLA-DQA1P01909 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HLA-DQA1P01909 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 AC132872.4-202ENST00000622924 2756 ntBASIC13.26□□□□□ -0.29
HLA-DQA1P01909 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 GPAT2P1-201ENST00000444924 1672 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms