Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SHOX2O60902 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SHOX2O60902 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SHOX2O60902 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SHOX2O60902 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SHOX2O60902 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SHOX2O60902 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SHOX2O60902 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.64■□□□□ 0.41
SHOX2O60902 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.64■□□□□ 0.41
SHOX2O60902 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
SHOX2O60902 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SHOX2O60902 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SHOX2O60902 AC008687.6-201ENST00000596318 630 ntBASIC17.64■□□□□ 0.41
SHOX2O60902 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
SHOX2O60902 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SHOX2O60902 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHOX2O60902 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
SHOX2O60902 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SHOX2O60902 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.63■□□□□ 0.41
SHOX2O60902 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.63■□□□□ 0.41
SHOX2O60902 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SHOX2O60902 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.63■□□□□ 0.41
SHOX2O60902 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.63■□□□□ 0.41
SHOX2O60902 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 AL445675.2-201ENST00000620291 557 ntBASIC17.63■□□□□ 0.41
SHOX2O60902 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SHOX2O60902 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHOX2O60902 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.63■□□□□ 0.41
SHOX2O60902 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHOX2O60902 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.62■□□□□ 0.41
SHOX2O60902 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.62■□□□□ 0.41
SHOX2O60902 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.62■□□□□ 0.41
SHOX2O60902 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.62■□□□□ 0.41
SHOX2O60902 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.62■□□□□ 0.41
SHOX2O60902 AC004264.1-201ENST00000608354 794 ntBASIC17.62■□□□□ 0.41
SHOX2O60902 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
SHOX2O60902 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
SHOX2O60902 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.62■□□□□ 0.41
SHOX2O60902 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.62■□□□□ 0.41
SHOX2O60902 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms