Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 AL390719.2-201ENST00000606993 987 ntBASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HIF3AQ9Y2N7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 CROCCP2-202ENST00000412962 2773 ntBASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 AC005104.2-201ENST00000427818 678 ntBASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 AC092647.4-201ENST00000457211 535 ntBASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 AC068472.1-201ENST00000474589 881 ntBASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 AC005332.3-201ENST00000589904 676 ntBASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 PKD1P5-201ENST00000532415 10291 ntBASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 FZD10-202ENST00000539839 3282 ntBASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.97■□□□□ 0.15
HIF3AQ9Y2N7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 LINC01311-201ENST00000565162 1445 ntBASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HIF3AQ9Y2N7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
HIF3AQ9Y2N7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HIF3AQ9Y2N7 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.96■□□□□ 0.14
HIF3AQ9Y2N7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.96■□□□□ 0.14
HIF3AQ9Y2N7 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HIF3AQ9Y2N7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms