Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 AC060834.1-201ENST00000443027 2032 ntBASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 AC124067.4-201ENST00000519691 2379 ntBASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 AC138932.1-201ENST00000534164 6830 ntBASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 AC211429.1-201ENST00000415277 523 ntBASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 AL121761.2-201ENST00000598007 1648 ntBASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.47
TCRBV7S3A2A0A539 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
TCRBV7S3A2A0A539 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
TCRBV7S3A2A0A539 AC010460.3-201ENST00000511359 1579 ntBASIC17.96■□□□□ 0.46
TCRBV7S3A2A0A539 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
TCRBV7S3A2A0A539 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 AC096633.1-201ENST00000422446 749 ntBASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 AC104076.2-201ENST00000448912 469 ntBASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 AC106886.4-201ENST00000623557 2502 ntBASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TCRBV7S3A2A0A539 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 Z83836.1-201ENST00000624605 1642 ntBASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TCRBV7S3A2A0A539 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms