Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 FAM220CP-201ENST00000395253 831 ntBASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 AC010460.3-201ENST00000511359 1579 ntBASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM39Q9HCM9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 COX5BP2-201ENST00000392354 334 ntBASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 DDX43P3-201ENST00000441064 443 ntBASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 UNC93B7-201ENST00000509439 705 ntBASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 IFNL4P1-201ENST00000607083 540 ntBASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 AL691432.3-201ENST00000621860 400 ntBASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM39Q9HCM9 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 AC009949.1-201ENST00000623048 1830 ntBASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 SLC25A6P5-201ENST00000435663 894 ntBASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms