Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 NUS1P1-201ENST00000446295 882 ntBASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.62■□□□□ 0.57
SCUBE3Q8IX30 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 PCDHB18P-201ENST00000524813 2368 ntBASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 POM121L3P-201ENST00000419331 1163 ntBASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 AC011467.2-201ENST00000598425 242 ntBASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 AC012313.10-201ENST00000623509 926 ntBASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCUBE3Q8IX30 SIRPAP1-201ENST00000448467 1770 ntBASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 NUS1P2-201ENST00000417358 873 ntBASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 MIR5100-201ENST00000579544 119 ntBASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCUBE3Q8IX30 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 FAM220CP-201ENST00000395253 831 ntBASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 PRELID1P1-202ENST00000567272 903 ntBASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 INTS4P1-201ENST00000438455 1935 ntBASIC18.59■□□□□ 0.57
SCUBE3Q8IX30 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms