Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 MIR3181-201ENST00000578512 73 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 AC120498.10-201ENST00000621827 505 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 AL117332.1-201ENST00000622628 974 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 NFYC-AS1-201ENST00000606277 1687 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 AL359183.1-201ENST00000623796 2132 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 MTMR9LP-203ENST00000426597 1545 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
LINC00643Q86TS7 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 AC026748.1-201ENST00000624349 3251 ntBASIC11.02□□□□□ -0.65
LINC00643Q86TS7 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
LINC00643Q86TS7 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 AC005089.1-201ENST00000619486 2241 ntBASIC11.01□□□□□ -0.65
LINC00643Q86TS7 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms