Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.93■□□□□ 0.3
MSX2P35548 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
MSX2P35548 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.93■□□□□ 0.3
MSX2P35548 PCDHA1-201ENST00000378133 2726 ntBASIC16.93■□□□□ 0.3
MSX2P35548 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
MSX2P35548 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.93■□□□□ 0.3
MSX2P35548 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSX2P35548 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.92■□□□□ 0.3
MSX2P35548 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.92■□□□□ 0.3
MSX2P35548 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
MSX2P35548 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSX2P35548 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.92■□□□□ 0.3
MSX2P35548 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 AL353807.1-201ENST00000427475 662 ntBASIC16.92■□□□□ 0.3
MSX2P35548 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
MSX2P35548 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.92■□□□□ 0.3
MSX2P35548 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.92■□□□□ 0.3
MSX2P35548 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MSX2P35548 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.92■□□□□ 0.3
MSX2P35548 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.92■□□□□ 0.3
MSX2P35548 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.92■□□□□ 0.3
MSX2P35548 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX2P35548 AC092171.3-201ENST00000610122 2651 ntBASIC16.92■□□□□ 0.3
MSX2P35548 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
MSX2P35548 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.91■□□□□ 0.3
MSX2P35548 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX2P35548 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MSX2P35548 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 APTR-205ENST00000447009 902 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX2P35548 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC16.91■□□□□ 0.3
MSX2P35548 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX2P35548 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
MSX2P35548 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
MSX2P35548 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
MSX2P35548 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.91■□□□□ 0.3
MSX2P35548 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX2P35548 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX2P35548 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
MSX2P35548 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
MSX2P35548 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
MSX2P35548 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
MSX2P35548 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.9■□□□□ 0.3
MSX2P35548 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
MSX2P35548 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
MSX2P35548 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
MSX2P35548 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 ESRRAP1-201ENST00000400596 1257 ntBASIC16.9■□□□□ 0.3
MSX2P35548 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.9■□□□□ 0.3
MSX2P35548 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX2P35548 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX2P35548 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms