Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19■□□□□ 0.63
SIX2Q9NPC8 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 AC016734.2-201ENST00000624325 1377 ntBASIC18.99■□□□□ 0.63
SIX2Q9NPC8 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX2Q9NPC8 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 SLC25A1P3-201ENST00000395415 828 ntBASIC18.98■□□□□ 0.63
SIX2Q9NPC8 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 AP005901.3-202ENST00000581653 237 ntBASIC18.98■□□□□ 0.63
SIX2Q9NPC8 IGHV3-41-201ENST00000613121 348 ntBASIC18.98■□□□□ 0.63
SIX2Q9NPC8 AC116407.4-201ENST00000623319 1061 ntBASIC18.98■□□□□ 0.63
SIX2Q9NPC8 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX2Q9NPC8 PRORSD1P-202ENST00000563365 2154 ntBASIC18.98■□□□□ 0.63
SIX2Q9NPC8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 AC009053.2-201ENST00000563701 2365 ntBASIC18.97■□□□□ 0.63
SIX2Q9NPC8 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX2Q9NPC8 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms