Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 AGGF1P2-201ENST00000426656 2106 ntBASIC16.3■□□□□ 0.2
COPS4Q9BT78 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 AL023284.2-201ENST00000405850 579 ntBASIC16.29■□□□□ 0.2
COPS4Q9BT78 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPS4Q9BT78 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 CICP6-201ENST00000457191 2729 ntBASIC16.29■□□□□ 0.2
COPS4Q9BT78 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.29■□□□□ 0.2
COPS4Q9BT78 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 GPAT2P1-201ENST00000444924 1672 ntBASIC16.28■□□□□ 0.2
COPS4Q9BT78 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 MIR718-201ENST00000390190 70 ntBASIC16.28■□□□□ 0.2
COPS4Q9BT78 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.28■□□□□ 0.2
COPS4Q9BT78 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPS4Q9BT78 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms