Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MMP3P08254 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
MMP3P08254 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.53■□□□□ 0.72
MMP3P08254 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.53■□□□□ 0.72
MMP3P08254 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.53■□□□□ 0.72
MMP3P08254 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.53■□□□□ 0.72
MMP3P08254 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 GGCT-205ENST00000409436 954 ntTSL 3 BASIC19.53■□□□□ 0.72
MMP3P08254 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.53■□□□□ 0.72
MMP3P08254 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.53■□□□□ 0.72
MMP3P08254 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
MMP3P08254 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.53■□□□□ 0.72
MMP3P08254 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.53■□□□□ 0.72
MMP3P08254 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.53■□□□□ 0.72
MMP3P08254 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
MMP3P08254 GPR89P-201ENST00000407924 1495 ntBASIC19.53■□□□□ 0.72
MMP3P08254 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
MMP3P08254 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MMP3P08254 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
MMP3P08254 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.53■□□□□ 0.72
MMP3P08254 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.52■□□□□ 0.72
MMP3P08254 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.52■□□□□ 0.72
MMP3P08254 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.52■□□□□ 0.72
MMP3P08254 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.52■□□□□ 0.72
MMP3P08254 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
MMP3P08254 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.52■□□□□ 0.72
MMP3P08254 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
MMP3P08254 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
MMP3P08254 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
MMP3P08254 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.52■□□□□ 0.72
MMP3P08254 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.52■□□□□ 0.72
MMP3P08254 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.52■□□□□ 0.72
MMP3P08254 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.52■□□□□ 0.72
MMP3P08254 AL353135.1-201ENST00000606729 504 ntBASIC19.52■□□□□ 0.72
MMP3P08254 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
MMP3P08254 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
MMP3P08254 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MMP3P08254 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MMP3P08254 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
MMP3P08254 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
MMP3P08254 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.51■□□□□ 0.71
MMP3P08254 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.51■□□□□ 0.71
MMP3P08254 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
MMP3P08254 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
MMP3P08254 PTCHD3P3-201ENST00000403073 906 ntBASIC19.51■□□□□ 0.71
MMP3P08254 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.51■□□□□ 0.71
MMP3P08254 IGLL3P-201ENST00000412472 434 ntBASIC19.51■□□□□ 0.71
MMP3P08254 AC211486.1-202ENST00000416371 468 ntBASIC19.51■□□□□ 0.71
MMP3P08254 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.51■□□□□ 0.71
MMP3P08254 LINC00982-205ENST00000420957 435 ntBASIC19.51■□□□□ 0.71
MMP3P08254 DNAJB3-202ENST00000449667 1266 ntBASIC19.51■□□□□ 0.71
MMP3P08254 ALG1L5P-201ENST00000482043 771 ntBASIC19.51■□□□□ 0.71
MMP3P08254 AC211476.1-201ENST00000503899 468 ntBASIC19.51■□□□□ 0.71
MMP3P08254 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.51■□□□□ 0.71
MMP3P08254 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
MMP3P08254 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.51■□□□□ 0.71
MMP3P08254 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.51■□□□□ 0.71
MMP3P08254 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.51■□□□□ 0.71
MMP3P08254 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
MMP3P08254 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
MMP3P08254 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP3P08254 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
MMP3P08254 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
MMP3P08254 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 144 ms