Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 IGHV3-52-201ENST00000519770 353 ntBASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 AC015911.4-201ENST00000588022 1070 ntBASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC163A0A0D9SF12 PHGDH-209ENST00000641074 1780 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AC244107.1-201ENST00000442033 332 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 PAWRP1-201ENST00000451083 565 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 CXCL1P1-201ENST00000502804 216 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AC109462.3-201ENST00000573934 613 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AC068137.2-201ENST00000605408 478 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AC097637.2-201ENST00000624096 1997 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 AC009336.1-201ENST00000608941 1553 ntBASIC17.45■□□□□ 0.38
CCDC163A0A0D9SF12 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 BX276092.7-203ENST00000637198 1536 ntBASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 AC093512.1-201ENST00000617969 520 ntBASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC163A0A0D9SF12 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC163A0A0D9SF12 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC163A0A0D9SF12 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC163A0A0D9SF12 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC163A0A0D9SF12 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC163A0A0D9SF12 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms