Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 AL023803.3-201ENST00000615559 522 ntBASIC10.62□□□□□ -0.71
LIMD2Q9BT23 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LIMD2Q9BT23 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 HMGA1P5-201ENST00000412453 271 ntBASIC10.61□□□□□ -0.71
LIMD2Q9BT23 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AL355075.4-201ENST00000554988 638 ntBASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 CR769767.2-201ENST00000622735 460 ntBASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AC092865.7-201ENST00000641832 219 ntBASIC10.61□□□□□ -0.71
LIMD2Q9BT23 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LIMD2Q9BT23 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 AC103702.1-201ENST00000548801 2630 ntBASIC10.6□□□□□ -0.71
LIMD2Q9BT23 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 KRT8P50-201ENST00000562022 1438 ntBASIC10.6□□□□□ -0.71
LIMD2Q9BT23 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LIMD2Q9BT23 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC10.6□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms