Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC96Q2M329 AC079776.4-201ENST00000511039 504 ntBASIC20.68■□□□□ 0.9
CCDC96Q2M329 AC106795.1-205ENST00000512851 1056 ntBASIC20.68■□□□□ 0.9
CCDC96Q2M329 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC96Q2M329 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CCDC96Q2M329 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC96Q2M329 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC96Q2M329 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC96Q2M329 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC96Q2M329 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
CCDC96Q2M329 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC96Q2M329 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC96Q2M329 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC96Q2M329 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC96Q2M329 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC96Q2M329 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 ABCD1P5-201ENST00000445663 754 ntBASIC20.67■□□□□ 0.9
CCDC96Q2M329 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 FGFR3P6-201ENST00000457012 610 ntBASIC20.67■□□□□ 0.9
CCDC96Q2M329 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC96Q2M329 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC96Q2M329 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 AL662844.1-201ENST00000546340 181 ntBASIC20.66■□□□□ 0.9
CCDC96Q2M329 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC96Q2M329 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC96Q2M329 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC96Q2M329 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 AP005117.1-201ENST00000584346 1413 ntBASIC20.65■□□□□ 0.9
CCDC96Q2M329 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.65■□□□□ 0.9
CCDC96Q2M329 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC96Q2M329 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms