Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SNX3O60493 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SNX3O60493 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.51■□□□□ 0.39
SNX3O60493 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.51■□□□□ 0.39
SNX3O60493 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
SNX3O60493 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 AC078925.2-201ENST00000624013 1973 ntBASIC17.51■□□□□ 0.39
SNX3O60493 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 AC046185.3-201ENST00000623228 1824 ntBASIC17.51■□□□□ 0.39
SNX3O60493 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SNX3O60493 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SNX3O60493 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.5■□□□□ 0.39
SNX3O60493 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.5■□□□□ 0.39
SNX3O60493 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.5■□□□□ 0.39
SNX3O60493 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SNX3O60493 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SNX3O60493 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SNX3O60493 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.5■□□□□ 0.39
SNX3O60493 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.5■□□□□ 0.39
SNX3O60493 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.5■□□□□ 0.39
SNX3O60493 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.5■□□□□ 0.39
SNX3O60493 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.5■□□□□ 0.39
SNX3O60493 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.5■□□□□ 0.39
SNX3O60493 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.5■□□□□ 0.39
SNX3O60493 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.5■□□□□ 0.39
SNX3O60493 RARRES2P10-201ENST00000564312 460 ntBASIC17.5■□□□□ 0.39
SNX3O60493 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.5■□□□□ 0.39
SNX3O60493 MTDHP1-201ENST00000605323 784 ntBASIC17.5■□□□□ 0.39
SNX3O60493 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.5■□□□□ 0.39
SNX3O60493 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
SNX3O60493 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.5■□□□□ 0.39
SNX3O60493 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SNX3O60493 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SNX3O60493 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.49■□□□□ 0.39
SNX3O60493 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
SNX3O60493 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
SNX3O60493 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 CROCCP5-201ENST00000436658 830 ntBASIC17.49■□□□□ 0.39
SNX3O60493 GUSBP6-202ENST00000438529 1198 ntBASIC17.49■□□□□ 0.39
SNX3O60493 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.49■□□□□ 0.39
SNX3O60493 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.49■□□□□ 0.39
SNX3O60493 FAM207BP-201ENST00000447172 505 ntBASIC17.49■□□□□ 0.39
SNX3O60493 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
SNX3O60493 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.49■□□□□ 0.39
SNX3O60493 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.49■□□□□ 0.39
SNX3O60493 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.49■□□□□ 0.39
SNX3O60493 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.49■□□□□ 0.39
SNX3O60493 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SNX3O60493 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.48■□□□□ 0.39
SNX3O60493 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 810.3 ms