Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 LINC00304-203ENST00000565008 1864 ntBASIC16.76■□□□□ 0.27
NR1H4Q96RI1 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 AC080038.1-201ENST00000611274 1154 ntBASIC16.76■□□□□ 0.27
NR1H4Q96RI1 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 HLA-J-201ENST00000462773 1622 ntBASIC16.76■□□□□ 0.27
NR1H4Q96RI1 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
NR1H4Q96RI1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 AL512625.2-201ENST00000417533 625 ntBASIC16.75■□□□□ 0.27
NR1H4Q96RI1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 IKBKGP1-201ENST00000612193 1073 ntBASIC16.75■□□□□ 0.27
NR1H4Q96RI1 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NR1H4Q96RI1 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 AC005915.1-201ENST00000624912 2018 ntBASIC16.74■□□□□ 0.27
NR1H4Q96RI1 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 TUBB8P6-201ENST00000436895 1288 ntBASIC16.74■□□□□ 0.27
NR1H4Q96RI1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NR1H4Q96RI1 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms