Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.65■□□□□ 0.26
PDGFAP04085 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PDGFAP04085 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
PDGFAP04085 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PDGFAP04085 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.64■□□□□ 0.25
PDGFAP04085 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 AC104109.2-201ENST00000602919 1418 ntBASIC16.64■□□□□ 0.25
PDGFAP04085 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.64■□□□□ 0.25
PDGFAP04085 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.64■□□□□ 0.25
PDGFAP04085 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 FAM220CP-201ENST00000395253 831 ntBASIC16.64■□□□□ 0.25
PDGFAP04085 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PDGFAP04085 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.64■□□□□ 0.25
PDGFAP04085 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.64■□□□□ 0.25
PDGFAP04085 AC113404.2-201ENST00000507884 177 ntBASIC16.64■□□□□ 0.25
PDGFAP04085 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.64■□□□□ 0.25
PDGFAP04085 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.64■□□□□ 0.25
PDGFAP04085 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.64■□□□□ 0.25
PDGFAP04085 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.64■□□□□ 0.25
PDGFAP04085 AC021087.4-201ENST00000563761 564 ntBASIC16.64■□□□□ 0.25
PDGFAP04085 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.64■□□□□ 0.25
PDGFAP04085 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 AC141586.5-201ENST00000624546 2050 ntBASIC16.64■□□□□ 0.25
PDGFAP04085 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.64■□□□□ 0.25
PDGFAP04085 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFAP04085 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PDGFAP04085 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 AC009053.2-201ENST00000563701 2365 ntBASIC16.63■□□□□ 0.25
PDGFAP04085 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PDGFAP04085 INTS4P1-201ENST00000438455 1935 ntBASIC16.63■□□□□ 0.25
PDGFAP04085 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 MIR149-201ENST00000384879 89 ntBASIC16.63■□□□□ 0.25
PDGFAP04085 AC005104.2-201ENST00000427818 678 ntBASIC16.63■□□□□ 0.25
PDGFAP04085 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.63■□□□□ 0.25
PDGFAP04085 IGHV3-22-201ENST00000520721 359 ntBASIC16.63■□□□□ 0.25
PDGFAP04085 SART3-203ENST00000546611 1184 ntBASIC16.63■□□□□ 0.25
PDGFAP04085 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.63■□□□□ 0.25
PDGFAP04085 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.63■□□□□ 0.25
PDGFAP04085 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 AC055717.3-201ENST00000622967 595 ntBASIC16.63■□□□□ 0.25
PDGFAP04085 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
PDGFAP04085 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PDGFAP04085 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.63■□□□□ 0.25
PDGFAP04085 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PDGFAP04085 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDGFAP04085 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PDGFAP04085 AC009113.1-201ENST00000570267 2443 ntBASIC16.62■□□□□ 0.25
PDGFAP04085 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDGFAP04085 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDGFAP04085 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PDGFAP04085 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDGFAP04085 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.62■□□□□ 0.25
PDGFAP04085 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.62■□□□□ 0.25
PDGFAP04085 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PDGFAP04085 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms