Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL1A1P02452 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL1A1P02452 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL1A1P02452 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.3■■□□□ 1
COL1A1P02452 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
COL1A1P02452 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.3■■□□□ 1
COL1A1P02452 AP006288.1-201ENST00000446065 395 ntBASIC21.3■■□□□ 1
COL1A1P02452 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
COL1A1P02452 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC21.3■■□□□ 1
COL1A1P02452 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC21.3■■□□□ 1
COL1A1P02452 COPE-211ENST00000600932 1144 ntTSL 5 BASIC21.3■■□□□ 1
COL1A1P02452 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.3■■□□□ 1
COL1A1P02452 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL1A1P02452 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL1A1P02452 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.3■■□□□ 1
COL1A1P02452 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL1A1P02452 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 AC006504.4-201ENST00000592118 1568 ntBASIC21.29■■□□□ 1
COL1A1P02452 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
COL1A1P02452 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 REXO1L11P-201ENST00000620964 1927 ntBASIC21.29■■□□□ 1
COL1A1P02452 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21.29■■□□□ 1
COL1A1P02452 AC007967.2-201ENST00000432613 625 ntBASIC21.29■■□□□ 1
COL1A1P02452 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.29■■□□□ 1
COL1A1P02452 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC21.29■■□□□ 1
COL1A1P02452 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC21.29■■□□□ 1
COL1A1P02452 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
COL1A1P02452 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.29■■□□□ 1
COL1A1P02452 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.29■■□□□ 1
COL1A1P02452 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL1A1P02452 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.29■■□□□ 1
COL1A1P02452 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.28■■□□□ 1
COL1A1P02452 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC21.28■■□□□ 1
COL1A1P02452 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC21.28■■□□□ 1
COL1A1P02452 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC21.28■■□□□ 1
COL1A1P02452 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC21.28■■□□□ 1
COL1A1P02452 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC21.28■■□□□ 1
COL1A1P02452 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC21.28■■□□□ 1
COL1A1P02452 AC006557.2-201ENST00000592985 1240 ntBASIC21.28■■□□□ 1
COL1A1P02452 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
COL1A1P02452 AC004706.3-202ENST00000621574 984 ntBASIC21.28■■□□□ 1
COL1A1P02452 PGM5P2-202ENST00000637225 1043 ntBASIC21.28■■□□□ 1
COL1A1P02452 AC134684.3-201ENST00000641758 218 ntBASIC21.28■■□□□ 1
COL1A1P02452 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL1A1P02452 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.28■■□□□ 1
COL1A1P02452 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
COL1A1P02452 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.28■■□□□ 1
COL1A1P02452 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL1A1P02452 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.28■■□□□ 1
COL1A1P02452 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL1A1P02452 AC138028.4-201ENST00000564984 1845 ntBASIC21.28■■□□□ 1
COL1A1P02452 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL1A1P02452 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL1A1P02452 AC112482.1-201ENST00000492080 688 ntBASIC21.27■■□□□ 1
COL1A1P02452 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC21.27■■□□□ 1
COL1A1P02452 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL1A1P02452 MIR1199-201ENST00000621445 119 ntBASIC21.27■■□□□ 1
COL1A1P02452 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
COL1A1P02452 AC009336.1-201ENST00000608941 1553 ntBASIC21.27■■□□□ 1
COL1A1P02452 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
COL1A1P02452 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.27■■□□□ 1
COL1A1P02452 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL1A1P02452 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.27■■□□□ 1
COL1A1P02452 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.27■■□□□ 1
COL1A1P02452 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL1A1P02452 AL354751.1-201ENST00000412768 1863 ntBASIC21.27■□□□□ 0.99
COL1A1P02452 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL1A1P02452 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL1A1P02452 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
COL1A1P02452 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL1A1P02452 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL1A1P02452 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL1A1P02452 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC21.26■□□□□ 0.99
COL1A1P02452 AC136632.2-201ENST00000512891 861 ntBASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms