Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 MIPEPP3-201ENST00000412105 444 ntBASIC13.41□□□□□ -0.26
HLA-DQA1P01909 NCF1B-203ENST00000435988 1254 ntBASIC13.41□□□□□ -0.26
HLA-DQA1P01909 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AC093010.1-201ENST00000473625 1624 ntBASIC13.4□□□□□ -0.26
HLA-DQA1P01909 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AL355802.2-201ENST00000402069 882 ntBASIC13.4□□□□□ -0.26
HLA-DQA1P01909 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 DUSP5P2-201ENST00000426873 1033 ntBASIC13.4□□□□□ -0.26
HLA-DQA1P01909 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 TSPY6P-201ENST00000448518 926 ntBASIC13.4□□□□□ -0.26
HLA-DQA1P01909 OR2A1-AS1-201ENST00000462305 773 ntBASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HLA-DQA1P01909 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
HLA-DQA1P01909 LINC00554-201ENST00000564841 3011 ntBASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 HYMAI-201ENST00000635591 3347 ntBASIC13.39□□□□□ -0.27
HLA-DQA1P01909 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 RPS2P52-201ENST00000469610 820 ntBASIC13.39□□□□□ -0.27
HLA-DQA1P01909 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms