Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC38.2■■■■□ 3.7
COL17A1Q9UMD9 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC38.19■■■■□ 3.7
COL17A1Q9UMD9 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC38.19■■■■□ 3.7
COL17A1Q9UMD9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC38.19■■■■□ 3.7
COL17A1Q9UMD9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC38.19■■■■□ 3.7
COL17A1Q9UMD9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC38.18■■■■□ 3.7
COL17A1Q9UMD9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
COL17A1Q9UMD9 AC131281.2-201ENST00000520478 145 ntBASIC38.18■■■■□ 3.7
COL17A1Q9UMD9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC38.18■■■■□ 3.7
COL17A1Q9UMD9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC38.17■■■■□ 3.7
COL17A1Q9UMD9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC38.17■■■■□ 3.7
COL17A1Q9UMD9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
COL17A1Q9UMD9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC38.16■■■■□ 3.7
COL17A1Q9UMD9 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
COL17A1Q9UMD9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
COL17A1Q9UMD9 AC110285.6-201ENST00000617652 491 ntBASIC38.15■■■■□ 3.7
COL17A1Q9UMD9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC38.15■■■■□ 3.7
COL17A1Q9UMD9 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC38.15■■■■□ 3.7
COL17A1Q9UMD9 MIR4787-201ENST00000607364 84 ntBASIC38.15■■■■□ 3.7
COL17A1Q9UMD9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC38.14■■■■□ 3.7
COL17A1Q9UMD9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC38.14■■■■□ 3.7
COL17A1Q9UMD9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC38.14■■■■□ 3.7
COL17A1Q9UMD9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC38.14■■■■□ 3.7
COL17A1Q9UMD9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
COL17A1Q9UMD9 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC38.13■■■■□ 3.69
COL17A1Q9UMD9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC38.13■■■■□ 3.69
COL17A1Q9UMD9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
COL17A1Q9UMD9 KRT16P3-201ENST00000439127 1283 ntBASIC38.13■■■■□ 3.69
COL17A1Q9UMD9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
COL17A1Q9UMD9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC38.12■■■■□ 3.69
COL17A1Q9UMD9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC38.11■■■■□ 3.69
COL17A1Q9UMD9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC38.1■■■■□ 3.69
COL17A1Q9UMD9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
COL17A1Q9UMD9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC38.09■■■■□ 3.69
COL17A1Q9UMD9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC38.09■■■■□ 3.69
COL17A1Q9UMD9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
COL17A1Q9UMD9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
COL17A1Q9UMD9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC38.07■■■■□ 3.69
COL17A1Q9UMD9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC38.07■■■■□ 3.68
COL17A1Q9UMD9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC38.07■■■■□ 3.68
COL17A1Q9UMD9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC38.07■■■■□ 3.68
COL17A1Q9UMD9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC38.06■■■■□ 3.68
COL17A1Q9UMD9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC38.05■■■■□ 3.68
COL17A1Q9UMD9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC38.05■■■■□ 3.68
COL17A1Q9UMD9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC38.05■■■■□ 3.68
COL17A1Q9UMD9 RARRES2P6-201ENST00000567333 442 ntBASIC38.05■■■■□ 3.68
COL17A1Q9UMD9 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC38.05■■■■□ 3.68
COL17A1Q9UMD9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC38.04■■■■□ 3.68
COL17A1Q9UMD9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC38.04■■■■□ 3.68
COL17A1Q9UMD9 AL135925.1-201ENST00000605920 1701 ntBASIC38.03■■■■□ 3.68
COL17A1Q9UMD9 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC38.03■■■■□ 3.68
COL17A1Q9UMD9 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC38.03■■■■□ 3.68
COL17A1Q9UMD9 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC38.03■■■■□ 3.68
COL17A1Q9UMD9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC38.02■■■■□ 3.68
COL17A1Q9UMD9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC38.02■■■■□ 3.68
COL17A1Q9UMD9 AC087393.1-201ENST00000582896 145 ntBASIC38.02■■■■□ 3.68
COL17A1Q9UMD9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC38.02■■■■□ 3.68
COL17A1Q9UMD9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC38■■■■□ 3.67
COL17A1Q9UMD9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC38■■■■□ 3.67
COL17A1Q9UMD9 KRT125P-201ENST00000546827 989 ntBASIC38■■■■□ 3.67
COL17A1Q9UMD9 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC38■■■■□ 3.67
COL17A1Q9UMD9 AC005837.3-201ENST00000612163 286 ntBASIC38■■■■□ 3.67
COL17A1Q9UMD9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC37.99■■■■□ 3.67
COL17A1Q9UMD9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC37.99■■■■□ 3.67
COL17A1Q9UMD9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC37.98■■■■□ 3.67
COL17A1Q9UMD9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC37.98■■■■□ 3.67
COL17A1Q9UMD9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC37.98■■■■□ 3.67
COL17A1Q9UMD9 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC37.96■■■■□ 3.67
COL17A1Q9UMD9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC37.96■■■■□ 3.67
COL17A1Q9UMD9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC37.96■■■■□ 3.67
COL17A1Q9UMD9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC37.96■■■■□ 3.67
COL17A1Q9UMD9 AC026271.2-201ENST00000428091 497 ntBASIC37.95■■■■□ 3.67
COL17A1Q9UMD9 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC37.94■■■■□ 3.66
COL17A1Q9UMD9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC37.93■■■■□ 3.66
COL17A1Q9UMD9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC37.93■■■■□ 3.66
COL17A1Q9UMD9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC37.92■■■■□ 3.66
COL17A1Q9UMD9 BX664725.1-201ENST00000438252 379 ntBASIC37.92■■■■□ 3.66
COL17A1Q9UMD9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
COL17A1Q9UMD9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
COL17A1Q9UMD9 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
COL17A1Q9UMD9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC37.91■■■■□ 3.66
COL17A1Q9UMD9 AL136116.3-201ENST00000402907 1138 ntBASIC37.9■■■■□ 3.66
COL17A1Q9UMD9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC37.9■■■■□ 3.66
COL17A1Q9UMD9 ZNRF2P3-201ENST00000424200 374 ntBASIC37.9■■■■□ 3.66
COL17A1Q9UMD9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC37.9■■■■□ 3.66
COL17A1Q9UMD9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC37.9■■■■□ 3.66
COL17A1Q9UMD9 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC37.89■■■■□ 3.66
COL17A1Q9UMD9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC37.88■■■■□ 3.65
COL17A1Q9UMD9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC37.88■■■■□ 3.65
COL17A1Q9UMD9 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
COL17A1Q9UMD9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC37.87■■■■□ 3.65
COL17A1Q9UMD9 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC37.87■■■■□ 3.65
COL17A1Q9UMD9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC37.87■■■■□ 3.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms