Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUEDC1Q9NWM3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CUEDC1Q9NWM3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CUEDC1Q9NWM3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUEDC1Q9NWM3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
CUEDC1Q9NWM3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.74■■□□□ 1.39
CUEDC1Q9NWM3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CUEDC1Q9NWM3 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CUEDC1Q9NWM3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CUEDC1Q9NWM3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.73■■□□□ 1.39
CUEDC1Q9NWM3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUEDC1Q9NWM3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.73■■□□□ 1.39
CUEDC1Q9NWM3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUEDC1Q9NWM3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CUEDC1Q9NWM3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CUEDC1Q9NWM3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
CUEDC1Q9NWM3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.72■■□□□ 1.39
CUEDC1Q9NWM3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUEDC1Q9NWM3 AC142472.1-201ENST00000612013 1741 ntBASIC23.71■■□□□ 1.39
CUEDC1Q9NWM3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUEDC1Q9NWM3 RNF126P1-201ENST00000567452 1320 ntBASIC23.71■■□□□ 1.39
CUEDC1Q9NWM3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.71■■□□□ 1.39
CUEDC1Q9NWM3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUEDC1Q9NWM3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.71■■□□□ 1.39
CUEDC1Q9NWM3 AC092296.2-201ENST00000589470 999 ntBASIC23.71■■□□□ 1.39
CUEDC1Q9NWM3 AL359504.2-201ENST00000605506 1601 ntBASIC23.7■■□□□ 1.39
CUEDC1Q9NWM3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CUEDC1Q9NWM3 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CUEDC1Q9NWM3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.69■■□□□ 1.38
CUEDC1Q9NWM3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CUEDC1Q9NWM3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CUEDC1Q9NWM3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CUEDC1Q9NWM3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.68■■□□□ 1.38
CUEDC1Q9NWM3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.68■■□□□ 1.38
CUEDC1Q9NWM3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CUEDC1Q9NWM3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.67■■□□□ 1.38
CUEDC1Q9NWM3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
CUEDC1Q9NWM3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CUEDC1Q9NWM3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CUEDC1Q9NWM3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUEDC1Q9NWM3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.66■■□□□ 1.38
CUEDC1Q9NWM3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUEDC1Q9NWM3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUEDC1Q9NWM3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUEDC1Q9NWM3 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CUEDC1Q9NWM3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.65■■□□□ 1.38
CUEDC1Q9NWM3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CUEDC1Q9NWM3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CUEDC1Q9NWM3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CUEDC1Q9NWM3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.65■■□□□ 1.38
CUEDC1Q9NWM3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.65■■□□□ 1.38
CUEDC1Q9NWM3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
CUEDC1Q9NWM3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
CUEDC1Q9NWM3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CUEDC1Q9NWM3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
CUEDC1Q9NWM3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.63■■□□□ 1.37
CUEDC1Q9NWM3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.63■■□□□ 1.37
CUEDC1Q9NWM3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CUEDC1Q9NWM3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CUEDC1Q9NWM3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
CUEDC1Q9NWM3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.62■■□□□ 1.37
CUEDC1Q9NWM3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.62■■□□□ 1.37
CUEDC1Q9NWM3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CUEDC1Q9NWM3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 ECEL1P2-201ENST00000461596 1295 ntBASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 AC012354.3-201ENST00000623734 483 ntBASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CUEDC1Q9NWM3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CUEDC1Q9NWM3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CUEDC1Q9NWM3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.6■■□□□ 1.37
CUEDC1Q9NWM3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.6■■□□□ 1.37
CUEDC1Q9NWM3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CUEDC1Q9NWM3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CUEDC1Q9NWM3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.59■■□□□ 1.37
CUEDC1Q9NWM3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CUEDC1Q9NWM3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.59■■□□□ 1.37
CUEDC1Q9NWM3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.59■■□□□ 1.37
CUEDC1Q9NWM3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CUEDC1Q9NWM3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CUEDC1Q9NWM3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CUEDC1Q9NWM3 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.58■■□□□ 1.37
CUEDC1Q9NWM3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CUEDC1Q9NWM3 AC025884.2-201ENST00000553429 711 ntBASIC23.58■■□□□ 1.37
CUEDC1Q9NWM3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
CUEDC1Q9NWM3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CUEDC1Q9NWM3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
CUEDC1Q9NWM3 SMPD5-203ENST00000639008 1464 ntBASIC23.57■■□□□ 1.36
CUEDC1Q9NWM3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CUEDC1Q9NWM3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.57■■□□□ 1.36
CUEDC1Q9NWM3 NTF6A-201ENST00000591175 560 ntBASIC23.57■■□□□ 1.36
CUEDC1Q9NWM3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.57■■□□□ 1.36
CUEDC1Q9NWM3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.56■■□□□ 1.36
CUEDC1Q9NWM3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CUEDC1Q9NWM3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms