Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CDC42SE1Q9NRR8 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDC42SE1Q9NRR8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDC42SE1Q9NRR8 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDC42SE1Q9NRR8 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDC42SE1Q9NRR8 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CDC42SE1Q9NRR8 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
CDC42SE1Q9NRR8 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC12.83□□□□□ -0.36
CDC42SE1Q9NRR8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CDC42SE1Q9NRR8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CDC42SE1Q9NRR8 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CDC42SE1Q9NRR8 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 BX255925.1-201ENST00000566954 1854 ntBASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC12.82□□□□□ -0.36
CDC42SE1Q9NRR8 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDC42SE1Q9NRR8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CDC42SE1Q9NRR8 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC12.79□□□□□ -0.36
CDC42SE1Q9NRR8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDC42SE1Q9NRR8 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDC42SE1Q9NRR8 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CDC42SE1Q9NRR8 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDC42SE1Q9NRR8 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDC42SE1Q9NRR8 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDC42SE1Q9NRR8 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDC42SE1Q9NRR8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CDC42SE1Q9NRR8 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CDC42SE1Q9NRR8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC12.77□□□□□ -0.36
CDC42SE1Q9NRR8 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDC42SE1Q9NRR8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDC42SE1Q9NRR8 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDC42SE1Q9NRR8 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CDC42SE1Q9NRR8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CDC42SE1Q9NRR8 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CDC42SE1Q9NRR8 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC12.74□□□□□ -0.37
CDC42SE1Q9NRR8 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDC42SE1Q9NRR8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDC42SE1Q9NRR8 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDC42SE1Q9NRR8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CDC42SE1Q9NRR8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDC42SE1Q9NRR8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CDC42SE1Q9NRR8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 ERN1-208ENST00000606895 2068 ntBASIC12.73□□□□□ -0.37
CDC42SE1Q9NRR8 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms